SMTL ID : 8jba.1

Discovery and Crystallography Study of Novel Oxadiazole Analogs as Small Molecule PD-1/PD-L1 inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

1 x AU9: (2~{S})-2-[[3-[[5-[(2-methyl-3-phenyl-phenoxy)methyl]-1,3,4-oxadiazol-2-yl]sulfanylmethyl]phenyl]methylamino]-3-oxidanyl-propanoic acid(Non-covalent)

AU9.1: 18 residues within 4Å: Chain A: Y.39, Q.49, M.98, I.99, S.100, A.104, D.105 Chain B: V.6, I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106, K.107, R.108 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.37, B:Y.39, B:M.98, B:A.104, B:Y.106, A:M.98, A:A.104 Hydrogen bonds: B:D.105, B:R.108, A:Q.49 Water bridges: B:D.9, B:R.108 pi-Stacking: B:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Discovery and Crystallography Study of Novel Biphenyl Ether and Oxadiazole Thioether (Non-Arylmethylamine)-Based Small-Molecule PD-1/PD-L1 Inhibitors as Immunotherapeutic Agents. J.Med.Chem. (2023)

Release Date

2023-10-25

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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