SMTL ID : 7nsz.1

Drosophila PGRP-LB Y78F mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.44, H.154, C.162 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.44, A:H.154, A:C.162

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 7 residues within 4Å: Chain A: R.155, Q.156, R.158, D.159, H.179, I.180, N.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.156, A:I.180, A:N.181, A:N.181 Salt bridges: A:H.179

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: W.75, N.76, R.94, A.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.76, A:N.76, A:R.94, A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orlans, J. et al., PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction. Int J Mol Sci (2021)

Release Date

2021-05-19

Peptides

Isoform A of Peptidoglycan-recognition protein LB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Isoform A of Peptidoglycan-recognition protein LB

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