- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 18 residues within 4Å:- Chain A: S.51, L.52, P.54, N.72, D.73, D.104, G.105, T.106, T.107, G.421, G.422, L.462, I.491, C.493, L.494, V.506, E.508
- Ligands: MG.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.73, A:D.104, A:T.106, A:T.107, A:G.108, A:E.508
ADP.3: 16 residues within 4Å:- Chain B: L.40, G.41, P.42, D.92, G.93, T.94, T.95, G.408, G.409, L.449, V.477, I.479, V.492, E.494
- Ligands: MG.4, AF3.5
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.41, B:G.93, B:T.94, B:G.409, B:E.494
- Water bridges: B:G.41, B:D.61
ADP.6: 17 residues within 4Å:- Chain C: Y.47, P.49, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, G.412, L.452, I.482, I.497, D.499
- Ligands: MG.7, AF3.8
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:G.100, C:T.101, C:N.102, C:F.103, C:T.166, C:S.170, C:G.412, C:D.499
ADP.9: 21 residues within 4Å:- Chain D: N.37, L.38, G.39, P.40, K.58, D.90, T.92, T.93, S.94, T.154, T.158, G.410, A.411, G.412, L.451, V.479, L.481, D.496, K.501
- Ligands: MG.10, AF3.11
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.37, D:G.39, D:A.411, D:G.412, D:D.496, D:K.501
- Salt bridges: D:K.58
ADP.12: 17 residues within 4Å:- Chain E: L.41, G.42, P.43, D.93, G.94, T.95, T.96, S.97, G.410, G.411, L.451, V.480, G.482, I.495, E.497
- Ligands: MG.13, AF3.14
8 PLIP interactions:8 interactions with chain E- Hydrogen bonds: E:G.42, E:G.94, E:T.95, E:T.96, E:S.97, E:G.411, E:G.482, E:E.497
ADP.15: 18 residues within 4Å:- Chain F: L.36, G.37, P.38, D.88, G.89, T.90, T.91, S.92, G.411, G.412, L.452, L.488, L.490, V.503, E.505, K.510
- Ligands: MG.16, AF3.17
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:D.88, F:G.89, F:T.90, F:S.92, F:G.412, F:E.505, F:K.510
ADP.19: 16 residues within 4Å:- Chain G: S.51, L.52, G.53, P.54, D.73, G.74, D.104, T.106, T.107, G.425, I.461, L.465, I.493, V.495, V.508
- Ligands: MG.18
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:G.53, G:G.74, G:T.106, G:G.425
- Water bridges: G:S.51
ADP.20: 17 residues within 4Å:- Chain H: L.43, G.44, P.45, D.97, G.98, T.99, T.100, S.101, T.165, G.409, G.410, I.450, M.480, I.493, E.495
- Ligands: MG.21, AF3.22
9 PLIP interactions:9 interactions with chain H- Hydrogen bonds: H:G.98, H:T.99, H:T.100, H:S.101, H:S.101, H:S.101, H:S.101, H:G.410, H:E.495
ADP.24: 18 residues within 4Å:- Chain J: S.51, L.52, P.54, N.72, D.73, D.104, G.105, T.106, T.107, G.421, G.422, L.462, I.491, C.493, L.494, V.506, E.508
- Ligands: MG.23
6 PLIP interactions:6 interactions with chain J- Hydrogen bonds: J:D.73, J:D.104, J:T.106, J:T.107, J:G.108, J:E.508
ADP.25: 16 residues within 4Å:- Chain K: L.40, G.41, P.42, D.92, G.93, T.94, T.95, G.408, G.409, L.449, V.477, I.479, V.492, E.494
- Ligands: MG.26, AF3.27
7 PLIP interactions:7 interactions with chain K- Hydrogen bonds: K:G.41, K:G.93, K:T.94, K:G.409, K:E.494
- Water bridges: K:G.41, K:D.61
ADP.28: 17 residues within 4Å:- Chain L: Y.47, P.49, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, G.412, L.452, I.482, I.497, D.499
- Ligands: MG.29, AF3.30
9 PLIP interactions:9 interactions with chain L- Hydrogen bonds: L:G.100, L:T.101, L:N.102, L:F.103, L:T.166, L:S.170, L:G.412, L:K.504, L:K.504
ADP.31: 21 residues within 4Å:- Chain M: N.37, L.38, G.39, P.40, K.58, D.90, T.92, T.93, S.94, T.154, T.158, G.410, A.411, G.412, L.451, V.479, L.481, D.496, K.501
- Ligands: MG.32, AF3.33
7 PLIP interactions:7 interactions with chain M- Hydrogen bonds: M:N.37, M:G.39, M:A.411, M:G.412, M:D.496, M:K.501
- Salt bridges: M:K.58
ADP.34: 18 residues within 4Å:- Chain N: L.41, G.42, P.43, D.93, G.94, T.95, T.96, S.97, G.410, G.411, I.447, L.451, V.480, G.482, I.495, E.497
- Ligands: MG.35, AF3.36
9 PLIP interactions:9 interactions with chain N- Hydrogen bonds: N:G.42, N:G.94, N:T.95, N:T.96, N:S.97, N:S.97, N:G.411, N:G.482, N:E.497
ADP.37: 18 residues within 4Å:- Chain O: L.36, G.37, P.38, D.88, G.89, T.90, T.91, S.92, G.411, G.412, L.452, L.488, L.490, V.503, E.505, K.510
- Ligands: MG.38, AF3.39
6 PLIP interactions:6 interactions with chain O- Hydrogen bonds: O:G.89, O:T.90, O:S.92, O:G.412, O:E.505, O:K.510
ADP.41: 16 residues within 4Å:- Chain P: S.51, L.52, G.53, P.54, D.73, G.74, D.104, T.106, T.107, G.425, I.461, L.465, I.493, V.495, V.508
- Ligands: MG.40
4 PLIP interactions:4 interactions with chain P- Hydrogen bonds: P:G.53, P:G.74, P:T.106, P:G.425
ADP.42: 17 residues within 4Å:- Chain Q: L.43, G.44, P.45, D.97, G.98, T.99, T.100, S.101, T.165, G.409, G.410, I.450, M.480, I.493, E.495
- Ligands: MG.43, AF3.44
9 PLIP interactions:9 interactions with chain Q- Hydrogen bonds: Q:G.98, Q:T.99, Q:T.100, Q:S.101, Q:S.101, Q:S.101, Q:S.101, Q:G.410, Q:E.495
- 12 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.5: 7 residues within 4Å:- Chain B: D.61, D.92, G.93, T.94, T.95
- Ligands: ADP.3, MG.4
No protein-ligand interaction detected (PLIP)AF3.8: 8 residues within 4Å:- Chain C: D.68, A.70, D.99, T.101, N.102, D.394
- Ligands: ADP.6, MG.7
No protein-ligand interaction detected (PLIP)AF3.11: 9 residues within 4Å:- Chain D: D.59, G.60, N.61, D.90, T.92, T.93, K.159
- Ligands: ADP.9, MG.10
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.90, D:D.90
AF3.14: 5 residues within 4Å:- Chain E: D.93, T.95, T.96
- Ligands: ADP.12, MG.13
No protein-ligand interaction detected (PLIP)AF3.17: 9 residues within 4Å:- Chain F: D.57, G.58, A.59, D.88, G.89, T.90, T.91
- Ligands: ADP.15, MG.16
No protein-ligand interaction detected (PLIP)AF3.22: 6 residues within 4Å:- Chain H: D.66, D.97, T.99, T.100
- Ligands: ADP.20, MG.21
No protein-ligand interaction detected (PLIP)AF3.27: 7 residues within 4Å:- Chain K: D.61, D.92, G.93, T.94, T.95
- Ligands: ADP.25, MG.26
No protein-ligand interaction detected (PLIP)AF3.30: 8 residues within 4Å:- Chain L: D.68, A.70, D.99, T.101, N.102, D.394
- Ligands: ADP.28, MG.29
No protein-ligand interaction detected (PLIP)AF3.33: 9 residues within 4Å:- Chain M: D.59, G.60, N.61, D.90, T.92, T.93, K.159
- Ligands: ADP.31, MG.32
2 PLIP interactions:2 interactions with chain M- Metal complexes: M:D.90, M:D.90
AF3.36: 5 residues within 4Å:- Chain N: D.93, T.95, T.96
- Ligands: ADP.34, MG.35
No protein-ligand interaction detected (PLIP)AF3.39: 9 residues within 4Å:- Chain O: D.57, G.58, A.59, D.88, G.89, T.90, T.91
- Ligands: ADP.37, MG.38
No protein-ligand interaction detected (PLIP)AF3.44: 6 residues within 4Å:- Chain Q: D.66, D.97, T.99, T.100
- Ligands: ADP.42, MG.43
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kelly, J.J. et al., Snapshots of actin and tubulin folding inside the TRiC chaperonin. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2022-03-02
- Peptides
- T-complex protein 1 subunit epsilon: AJ
T-complex protein 1 subunit eta: BK
T-complex protein 1 subunit theta: CL
T-complex protein 1 subunit zeta: DM
T-complex protein 1 subunit gamma: EN
T-complex protein 1 subunit alpha: FO
T-complex protein 1 subunit delta: GP
T-complex protein 1 subunit beta: HQ
Nanobody: IR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EJ
eB
HK
hC
QL
qD
ZM
zE
GN
gF
AO
aG
DP
dH
BQ
bI
NR
n
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 12 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kelly, J.J. et al., Snapshots of actin and tubulin folding inside the TRiC chaperonin. Nat.Struct.Mol.Biol. (2022)
- Release Date
- 2022-03-02
- Peptides
- T-complex protein 1 subunit epsilon: AJ
T-complex protein 1 subunit eta: BK
T-complex protein 1 subunit theta: CL
T-complex protein 1 subunit zeta: DM
T-complex protein 1 subunit gamma: EN
T-complex protein 1 subunit alpha: FO
T-complex protein 1 subunit delta: GP
T-complex protein 1 subunit beta: HQ
Nanobody: IR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EJ
eB
HK
hC
QL
qD
ZM
zE
GN
gF
AO
aG
DP
dH
BQ
bI
NR
n