SMTL ID : 7nyp.2 (1 other biounit)

monomeric acetyl-CoA synthase in closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: I.118, E.119, R.122, N.216, F.217, T.218, Q.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.219

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 7 residues within 4Å: Chain A: I.151, V.154, C.514, C.600, C.602 Ligands: NI.3, SF4.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.514, A:C.600, A:C.602, H2O.16 NI.3: 7 residues within 4Å: Chain A: F.234, L.532, C.600, G.601, C.602, F.603 Ligands: NI.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.600, A:C.602

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.4: 13 residues within 4Å: Chain A: I.151, C.511, L.513, C.514, H.521, C.523, G.531, L.532, C.533, I.536, C.600, C.602 Ligands: NI.2 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.511, A:C.514, A:C.523, A:C.533

2 x UW8: 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid(Non-covalent)

UW8.5: 3 residues within 4Å: Chain A: K.340, K.351, R.386 8 PLIP interactions: 8 interactions with chain A Salt bridges: A:K.340, A:K.340, A:K.340, A:K.340, A:K.351, A:K.351, A:K.351, A:R.386 UW8.6: 3 residues within 4Å: Chain A: K.51, Y.52, K.125 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.51, A:K.125 Salt bridges: A:K.51, A:K.51, A:K.51, A:K.51, A:K.51, A:K.125, A:K.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kreibich, J. et al., Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase. To Be Published

Release Date

2022-04-13

Peptides

CO-methylating acetyl-CoA synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CO-methylating acetyl-CoA synthase

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