SMTL ID : 7o12.1

ABC transporter NosDFY, AMPPNP-bound in GDN

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-2-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.42, T.43, E.81, D.153 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.43, A:E.81 MG.3: 4 residues within 4Å: Chain B: T.43, E.81, D.153 Ligands: ANP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.43, B:E.81 MG.5: 5 residues within 4Å: Chain C: D.359, N.361, D.363, L.365, D.367 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.359, C:D.363, C:L.365, C:D.367, H2O.1

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 13 residues within 4Å: Chain A: Y.13, V.18, H.37, N.38, G.39, A.40, G.41, K.42, T.43, T.44, E.81, H.186 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.13, A:N.38, A:N.38, A:A.40, A:G.41, A:K.42, A:K.42, A:T.43, A:T.43, A:T.43, A:T.44 pi-Stacking: A:Y.13, A:Y.13 ANP.4: 13 residues within 4Å: Chain B: Y.13, V.18, H.37, N.38, G.39, A.40, G.41, K.42, T.43, T.44, E.81, H.186 Ligands: MG.3 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.13, B:N.38, B:N.38, B:A.40, B:G.41, B:K.42, B:K.42, B:T.43, B:T.43, B:T.43, B:T.44 pi-Stacking: B:Y.13, B:Y.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muller, C. et al., Molecular interplay of an assembly machinery for nitrous oxide reductase. Nature (2022)

Release Date

2022-04-13

Peptides

Probable ABC transporter ATP-binding protein NosF: AB
Probable ABC transporter binding protein NosD: C
Probable ABC transporter permease protein NosY: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
E

E
D

Membrane

We predict this structure to be a membrane protein.
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Probable ABC transporter ATP-binding protein NosF

Probable ABC transporter binding protein NosD

Probable ABC transporter permease protein NosY

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