SMTL ID : 7o17.1

ABC transporter NosDFY E154Q, ATP-bound in lipid nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain B: Y.13, V.18, H.37, N.38, G.39, A.40, G.41, K.42, T.43, T.44, E.81, H.186 Chain C: R.124, T.128, S.130, K.131, G.132, M.133 Ligands: MG.2 19 PLIP interactions: 5 interactions with chain C, 14 interactions with chain B Hydrogen bonds: C:R.124, C:R.124, C:S.130, C:K.131, C:G.132, B:G.39, B:G.39, B:A.40, B:G.41, B:K.42, B:T.43, B:T.43, B:T.43, B:T.44, B:T.44 Salt bridges: B:K.42, B:K.42 pi-Stacking: B:Y.13, B:Y.13 ATP.3: 22 residues within 4Å: Chain B: R.124, T.128, Y.129, S.130, K.131, G.132, M.133, G.158 Chain C: Y.13, V.18, H.37, N.38, G.39, A.40, G.41, K.42, T.43, T.44, E.81, Q.154, H.186 Ligands: MG.4 18 PLIP interactions: 13 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:N.38, C:G.39, C:A.40, C:G.41, C:K.42, C:T.43, C:T.43, C:T.44, C:E.81, C:Q.154, B:R.124, B:R.124, B:S.130, B:K.131, B:G.132 Salt bridges: C:K.42, C:K.42 pi-Stacking: C:Y.13

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain B: K.42, T.43, E.81, D.153, Q.154 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.43, B:E.81 MG.4: 6 residues within 4Å: Chain C: K.42, T.43, E.81, D.153, Q.154 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muller, C. et al., Molecular interplay of an assembly machinery for nitrous oxide reductase. Nature (2022)

Release Date

2022-04-13

Peptides

Probable ABC transporter binding protein NosD: A
Probable ABC transporter ATP-binding protein NosF: BC
Probable ABC transporter permease protein NosY: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Probable ABC transporter binding protein NosD

Probable ABC transporter ATP-binding protein NosF

Probable ABC transporter permease protein NosY

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