SMTL ID : 7o35.2 (1 other biounit)

Crystal Structure of SARS-CoV-2 N-CTD in complex with GTP (I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 8 residues within 4Å: Chain A: R.31, R.34, T.54, W.102 Chain B: M.89, A.108, I.109, K.110 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.31, A:R.31, A:Q.44, A:T.54, B:A.108, B:K.110 Water bridges: A:R.34, A:R.34, B:A.108 Salt bridges: A:R.31, A:R.34, A:R.34, B:K.110 pi-Stacking: A:W.102, A:W.102 pi-Cation interactions: A:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rafael Ciges-Tomas, J. et al., Identification of a guanine-specific pocket in the protein N of SARS-CoV-2. Commun Biol (2022)

Release Date

2022-04-13

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Nucleoprotein

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