SMTL ID : 7o36.1 (1 other biounit)

Crystal Structure of SARS-CoV-2 N-CTD in complex with GTP (II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 9 residues within 4Å: Chain A: S.27, R.31, R.34, T.54, W.102 Chain B: M.89, A.108, I.109, K.110 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.27, A:R.31, A:R.31, A:T.54, B:A.108, B:K.110 Water bridges: A:R.34, A:R.34, A:F.46 Salt bridges: A:R.31, A:R.34, A:R.34 pi-Stacking: A:W.102 pi-Cation interactions: A:R.31, B:K.110

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 12 residues within 4Å: Chain A: S.84, F.87, G.88 Chain B: A.36, V.42, F.46, R.49, F.58, L.63, G.67, T.68, W.73 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:F.58, A:S.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rafael Ciges-Tomas, J. et al., Identification of a guanine-specific pocket in the protein N of SARS-CoV-2. Commun Biol (2022)

Release Date

2022-04-13

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoprotein

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