SMTL ID : 7o50.2 (1 other biounit)

Crystal structure of human legumain in complex with Gly-Ser-Asn peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ACE- GLY- SER- ASN: GLY-SER-ASN(Non-covalent)

ACE-GLY-SER-ASN.1: 14 residues within 4Å: Chain A: R.19, H.20, N.122, H.123, G.124, E.162, A.163, C.164, S.190, S.191, Y.192, A.193, Y.203, D.206 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.19, A:H.123, A:G.124, A:E.162, A:C.164, A:S.190, A:S.191, A:S.191, A:A.193, A:D.206 Water bridges: A:R.19, A:R.19 Salt bridges: A:H.123

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: K.156, D.175, N.176, N.247 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.142, H.146, H.172 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dall, E. et al., The Peptide Ligase Activity of Human Legumain Depends on Fold Stabilization and Balanced Substrate Affinities. Acs Catalysis (2021)

Release Date

2021-09-22

Peptides

Legumain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Legumain

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