SMTL ID : 7oaj.1 (3 other biounits)

Crystal structure of pseudokinase CASK in complex with compound 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x V6E: 4-(cyclopentylamino)-2-[(3,4-dichlorophenyl)methylamino]-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide(Non-covalent)

V6E.1: 18 residues within 4Å: Chain A: I.34, G.35, V.42, A.55, V.91, F.107, E.108, F.109, M.110, D.111, G.112, A.113, K.121, C.162, L.164, K.168, G.177, G.178 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.34, A:V.42, A:L.164 Hydrogen bonds: A:E.108, A:M.110, A:M.110, A:K.121 Halogen bonds: A:C.162, A:C.162

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: R.44, I.46 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.44, A:R.44 EDO.3: 6 residues within 4Å: Chain A: S.40, K.57, V.59, F.64, L.75, E.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.40, A:S.40, A:K.57, A:E.78 EDO.4: 9 residues within 4Å: Chain A: C.82, L.85, I.90, V.91, E.92, L.93, F.107, G.177, F.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.82, A:L.93 Water bridges: A:F.179 EDO.5: 3 residues within 4Å: Chain A: R.146, D.150, Y.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.150, A:Y.284 EDO.6: 5 residues within 4Å: Chain A: N.152, G.186, E.187, G.189, K.214 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.152, A:G.186 Water bridges: A:E.187, A:E.187 EDO.7: 3 residues within 4Å: Chain A: C.232, L.233, Y.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.233 Water bridges: A:L.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russ, N. et al., Design and Development of a Chemical Probe for Pseudokinase Ca 2+ /calmodulin-Dependent Ser/Thr Kinase. J.Med.Chem. (2021)

Release Date

2021-05-19

Peptides

Peripheral plasma membrane protein CASK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peripheral plasma membrane protein CASK

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