SMTL ID : 7oak.1 (3 other biounits)

Crystal structure of pseudokinase CASK in complex with compound 26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x V6B: 2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclopentylamino)-N-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide(Non-covalent)

V6B.1: 22 residues within 4Å: Chain A: I.34, G.35, V.42, A.55, V.91, F.107, E.108, F.109, M.110, D.111, G.112, A.113, E.118, K.121, H.161, C.162, L.164, K.168, K.175, G.177, G.178 Ligands: EDO.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.34, A:V.42 Hydrogen bonds: A:I.34, A:E.108, A:M.110, A:G.112 Halogen bonds: A:K.175

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.44, I.46, Q.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.44, A:R.44, A:Q.53 EDO.3: 1 residues within 4Å: Chain A: E.29 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: S.167, E.169, P.173 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.167, A:E.169 EDO.5: 5 residues within 4Å: Chain A: E.108, F.109, A.166, K.175 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.166, A:K.175 EDO.6: 4 residues within 4Å: Chain A: A.113, D.114, F.117 Ligands: V6B.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.114, A:D.114 Water bridges: A:I.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russ, N. et al., Design and Development of a Chemical Probe for Pseudokinase Ca 2+ /calmodulin-Dependent Ser/Thr Kinase. J.Med.Chem. (2021)

Release Date

2021-05-19

Peptides

Peripheral plasma membrane protein CASK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peripheral plasma membrane protein CASK

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