SMTL ID : 7odu.1 (2 other biounits)

Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.26, N.27, F.30 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.30 NAG-NAG.2: 8 residues within 4Å: Chain B: L.57, V.58, Q.59, W.93, N.95, S.97, N.100, A.103 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.103 Hydrogen bonds: B:Q.59

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.85 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: R.65, N.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.65, B:R.65

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 3 residues within 4Å: Chain A: E.39, H.125, H.127 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.39, A:E.39, A:H.125, A:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skalova, T. et al., Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11. To Be Published

Release Date

2022-06-01

Peptides

C-type lectin domain family 2 member D11: A
Killer cell lectin-like receptor subfamily B member 1B allele A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C-type lectin domain family 2 member D11

Killer cell lectin-like receptor subfamily B member 1B allele A

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