SMTL ID : 7odu.3 (2 other biounits)

Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.26, N.27, F.30 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.30

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.85 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain B: N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: E.39, H.125, H.127 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.39, A:E.39, A:H.125, A:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skalova, T. et al., Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11. To Be Published

Release Date

2022-06-01

Peptides

C-type lectin domain family 2 member D11: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-type lectin domain family 2 member D11

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