SMTL ID : 7oks.1 (3 other biounits)

X-ray structure of soluble EPCR in P212121 space group

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 1 residues within 4Å: Chain A: N.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.47 Water bridges: A:N.47

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: A.90, P.92, L.93, N.119 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain A: L.14, I.16, Q.28, N.30, L.37, R.96 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96, A:R.96

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.4: 22 residues within 4Å: Chain A: M.13, N.30, H.39, L.41, T.65, G.68, L.69, Y.72, Q.75, F.76, L.79, V.80, L.89, I.95, V.116, V.118, F.123, T.147, R.156, T.157, F.164, T.168 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.13, A:L.41, A:L.41, A:T.65, A:L.69, A:L.69, A:Y.72, A:Y.72, A:Y.72, A:Y.72, A:F.76, A:L.79, A:V.80, A:L.89, A:L.89, A:I.95, A:V.116, A:V.116, A:V.118, A:T.157, A:F.164

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: H.12, N.30, A.31, S.32 Ligands: NAG-NAG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-04-27

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothelial protein C receptor

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