SMTL ID : 7oks.2 (3 other biounits)

X-ray structure of soluble EPCR in P212121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: L.14, I.16, Q.28, N.30, L.37, R.96 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: A.90, P.92, N.119 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 3 residues within 4Å: Chain A: T.46, N.47, T.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.49, A:T.49 Water bridges: A:N.47, A:T.49

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.4: 22 residues within 4Å: Chain A: L.11, M.13, L.14, Q.15, A.31, H.39, L.41, T.65, G.68, Y.72, F.76, L.89, L.99, F.114, V.116, F.123, V.143, L.151, R.156, T.157, L.161, F.164 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.11, A:M.13, A:Q.15, A:L.41, A:L.41, A:T.65, A:Y.72, A:Y.72, A:Y.72, A:F.76, A:L.89, A:L.99, A:F.114, A:V.116, A:V.143, A:L.151, A:T.157, A:F.164, A:F.164

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: H.12, L.14, N.30, A.31, S.32 Ligands: NAG-NAG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.31 EDO.6: 1 residues within 4Å: Chain A: N.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-04-27

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endothelial protein C receptor

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