SMTL ID : 7oyl.1

Phosphoglucose isomerase of Aspergillus fumigatus in complexed with Glucose-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: T.71, E.72 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: E.392, N.396 Chain B: R.357 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: T.71, E.72 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: R.357 Chain B: E.392, N.396 Ligand excluded by PLIP

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: P.183, Y.184, H.423 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.423 GOL.4: 4 residues within 4Å: Chain A: T.409, K.410, L.411, R.474 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.409 Water bridges: A:K.410, A:L.411, A:L.411, A:I.412 GOL.5: 9 residues within 4Å: Chain A: Q.407, P.466, T.469, L.471, R.474 Chain B: K.372, A.373, I.374, Y.380 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.407, A:Q.407, A:R.474, B:A.373, B:I.374 GOL.6: 4 residues within 4Å: Chain A: S.5, P.7, F.102, R.376 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.5, A:S.5, A:R.376, A:R.376 Water bridges: A:P.99 GOL.7: 7 residues within 4Å: Chain A: D.131, V.132, V.135, G.275, F.276, A.277, W.279 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.275 Water bridges: A:D.131, A:D.131, A:A.277 GOL.12: 3 residues within 4Å: Chain B: P.183, Y.184, H.423 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.423 Water bridges: B:H.423 GOL.13: 4 residues within 4Å: Chain B: T.409, K.410, L.411, R.474 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Water bridges: A:Y.380, B:K.410, B:L.411, B:L.411, B:I.412 Hydrogen bonds: B:T.409 GOL.14: 9 residues within 4Å: Chain A: K.372, A.373, I.374, Y.380 Chain B: Q.407, P.466, T.469, L.471, R.474 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.407, B:R.474, A:A.373, A:I.374 Water bridges: B:Q.407 GOL.15: 4 residues within 4Å: Chain B: S.5, P.7, F.102, R.376 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.5, B:S.5, B:R.376, B:R.376 Water bridges: B:P.99 GOL.16: 7 residues within 4Å: Chain B: D.131, V.132, V.135, G.275, F.276, A.277, W.279 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.275 Water bridges: B:D.131, B:A.277

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 4 residues within 4Å: Chain A: Q.305, T.485, P.486, S.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.485, A:S.487 NA.17: 4 residues within 4Å: Chain B: Q.305, T.485, P.486, S.487 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.485, B:S.487

2 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.9: 14 residues within 4Å: Chain A: I.167, G.168, G.169, S.170, S.220, K.221, T.222, T.225, G.282, Q.364, E.368, V.517, K.521 Chain B: H.399 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.169, A:S.170, A:K.221, A:T.222, A:T.222, A:T.225, A:T.225, A:R.283, A:Q.364, A:E.368 Water bridges: A:I.167, A:T.228, A:G.282, A:G.282, A:R.283, A:E.368, A:K.521, B:Q.398 Salt bridges: A:K.521, B:H.399 BG6.18: 14 residues within 4Å: Chain A: H.399 Chain B: I.167, G.168, G.169, S.170, S.220, K.221, T.222, T.225, G.282, Q.364, E.368, V.517, K.521 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.169, B:S.170, B:K.221, B:T.222, B:T.222, B:T.225, B:T.225, B:R.283, B:Q.364, B:E.368 Water bridges: B:I.167, B:G.282, B:G.282, B:R.283, B:E.368, B:K.521, A:Q.398, A:H.399 Salt bridges: B:K.521, A:H.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Phosphoglucose Isomerase Is Important for Aspergillus fumigatus Cell Wall Biogenesis. Mbio (2022)

Release Date

2022-07-13

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate isomerase

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