SMTL ID : 7u34.1

The structure of phosphoglucose isomerase from Aspergillus fumigatus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.4, S.5, M.6, P.7, I.100, F.102, R.376 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.5, A:S.5, A:R.376, A:R.376 Water bridges: A:P.99 GOL.2: 12 residues within 4Å: Chain A: K.372, A.373, I.374, Y.380 Chain B: Q.407, G.408, P.466, H.467, T.469, F.470, L.471, R.474 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:A.373, B:Q.407, B:Q.407, B:P.466, B:R.474 Water bridges: A:I.374, B:Q.407 GOL.3: 8 residues within 4Å: Chain A: D.131, V.132, V.135, T.258, G.275, F.276, A.277, W.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.277 Water bridges: A:D.131 GOL.11: 7 residues within 4Å: Chain B: G.4, S.5, M.6, P.7, I.100, F.102, R.376 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.5, B:S.5, B:R.376, B:R.376 Water bridges: B:P.99 GOL.12: 12 residues within 4Å: Chain A: Q.407, G.408, P.466, H.467, T.469, F.470, L.471, R.474 Chain B: K.372, A.373, I.374, Y.380 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.407, A:Q.407, A:P.466, A:R.474, B:A.373 Water bridges: A:Q.407, B:I.374 GOL.13: 8 residues within 4Å: Chain B: D.131, V.132, V.135, T.258, G.275, F.276, A.277, W.279 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.277

2 x FLC: CITRATE ANION(Non-covalent)

FLC.4: 6 residues within 4Å: Chain A: I.167, T.222, T.224, T.225, A.226, K.521 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.222, A:T.224, A:T.224, A:A.226 Water bridges: A:K.521 Salt bridges: A:K.521 FLC.14: 6 residues within 4Å: Chain B: I.167, T.222, T.224, T.225, A.226, K.521 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.222, B:T.224, B:T.224, B:A.226 Water bridges: B:K.521 Salt bridges: B:K.521

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: Y.37, R.44, F.48, T.71, E.72 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: Y.380, V.381, Y.383, T.384 Chain B: T.409 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain B: Y.37, R.44, F.48, T.71, E.72 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain A: T.409 Chain B: Y.380, V.381, Y.383, T.384 Ligand excluded by PLIP

8 x NA: SODIUM ION(Non-functional Binders)

NA.7: 6 residues within 4Å: Chain A: V.56, D.57, Q.305, T.485, P.486, S.487 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.485, A:S.487, A:S.487 NA.8: 7 residues within 4Å: Chain A: H.406, A.445, L.446, G.449, F.470, G.472 Chain B: L.519 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.445 Water bridges: A:G.472 NA.9: 9 residues within 4Å: Chain A: N.370, G.371, K.372, T.385, G.386 Chain B: L.404, G.408, T.409, K.410 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.409, B:T.409, A:T.385 NA.10: 1 residues within 4Å: Chain B: P.461 No protein-ligand interaction detected (PLIP) NA.17: 6 residues within 4Å: Chain B: V.56, D.57, Q.305, T.485, P.486, S.487 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.485, B:S.487, B:S.487 NA.18: 7 residues within 4Å: Chain A: L.519 Chain B: H.406, A.445, L.446, G.449, F.470, G.472 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.406 Water bridges: B:G.472 NA.19: 9 residues within 4Å: Chain A: L.404, G.408, T.409, K.410 Chain B: N.370, G.371, K.372, T.385, G.386 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.385, A:T.409, A:T.409 NA.20: 1 residues within 4Å: Chain A: P.461 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Phosphoglucose Isomerase Is Important for Aspergillus fumigatus Cell Wall Biogenesis. Mbio (2022)

Release Date

2022-08-17

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate isomerase

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