SMTL ID : 7p3n.1

F1Fo-ATP synthase from Acinetobacter baumannii (state 2)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-10-1-2-1-1-1-mer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 12 residues within 4Å: Chain A: Q.173, T.174, G.175, K.176, T.177, E.332, F.361, R.366, Q.436 Chain F: R.347, D.350 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.173, A:T.174, A:T.174, A:G.175, A:K.176, A:T.177 Salt bridges: A:K.176, A:K.176 pi-Stacking: A:F.361 ATP.3: 12 residues within 4Å: Chain B: Q.173, T.174, G.175, K.176, T.177, A.178, R.366, Q.434, K.435, Q.436, Y.437 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.173, B:T.174, B:T.174, B:G.175, B:K.176, B:T.177, B:A.178, B:Q.434, B:Q.436, B:Y.437 Salt bridges: B:K.176, B:K.176 ATP.5: 14 residues within 4Å: Chain C: R.172, Q.173, T.174, G.175, K.176, T.177, A.178, R.366, Q.434, K.435, Q.436 Chain D: R.347, D.350 Ligands: MG.6 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.173, C:T.174, C:G.175, C:K.176, C:T.177, C:Q.434, C:Q.436 Salt bridges: C:K.176, C:K.176, D:R.347

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.177 Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: T.177, Q.201 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.177 MG.6: 2 residues within 4Å: Chain C: T.177 Ligands: ATP.5 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain E: K.154 Ligands: ADP.7 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 15 residues within 4Å: Chain C: S.376, R.377 Chain E: G.149, A.150, G.151, V.152, G.153, K.154, T.155, V.156, Y.336, F.409, A.412, F.415 Ligands: MG.8 11 PLIP interactions: 3 interactions with chain C, 8 interactions with chain E Hydrogen bonds: C:S.376, C:R.377, E:G.149, E:G.151, E:V.152, E:G.153, E:K.154, E:T.155, E:V.156 Salt bridges: C:R.377 pi-Stacking: E:F.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demmer, J.K. et al., Structure of ATP synthase from ESKAPE pathogen Acinetobacter baumannii. Sci Adv (2022)

Release Date

2022-02-02

Peptides

ATP synthase subunit alpha: ABC
ATP synthase subunit beta: DEF
ATP synthase subunit c: GHIJKLMNOP
ATP synthase subunit a: Q
ATP synthase subunit b: RV
ATP synthase subunit delta: S
ATP synthase epsilon chain: T
ATP synthase gamma chain: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
J

J
K

K
L

L
O

M
P

N
Q

O
R

P
S

Q
a

R
b

V
p

S
d

T
e

U
g

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit alpha

ATP synthase subunit beta

ATP synthase subunit c

ATP synthase subunit a

ATP synthase subunit b

ATP synthase subunit delta

ATP synthase epsilon chain

ATP synthase gamma chain

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