SMTL ID : 7p3w.1

F1Fo-ATP synthase from Acinetobacter baumannii (state 3)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-10-1-2-1-1-1-mer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: Y.151, R.172, Q.173, T.174, G.175, K.176, T.177, A.178, E.332, F.361, R.366, P.367, Q.434, K.435, Q.436 Chain F: R.347 Ligands: MG.2 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:Y.151, A:Q.173, A:Q.173, A:T.174, A:G.175, A:T.177, A:T.177, A:A.178, A:Q.434, F:R.347 Salt bridges: A:K.176, A:K.176 pi-Stacking: A:F.361 ATP.3: 14 residues within 4Å: Chain B: R.172, Q.173, G.175, K.176, T.177, A.178, F.361, R.366, Q.434, K.435, Q.436 Chain E: R.347, D.350 Ligands: MG.4 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:Y.151, B:Q.173, B:G.175, B:K.176, B:T.177, B:T.177, B:A.178, B:R.366, B:Q.434, B:Q.436, B:Q.436, E:R.347 Salt bridges: B:K.176, B:K.176 pi-Stacking: B:F.361 ATP.5: 14 residues within 4Å: Chain C: R.172, Q.173, T.174, G.175, K.176, T.177, A.178, R.366, Q.434, K.435, Q.436 Chain D: R.347, D.350 Ligands: MG.6 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Q.173, C:T.174, C:G.175, C:K.176, C:T.177, C:T.177, C:A.178, C:R.366, C:Q.434, C:Q.436, C:Q.436 Salt bridges: D:R.347, D:R.347

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.177, Q.201 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.177 MG.4: 3 residues within 4Å: Chain B: T.177, Q.201 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.177 MG.6: 2 residues within 4Å: Chain C: T.177 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.177 MG.8: 2 residues within 4Å: Chain F: K.154 Ligands: ADP.7 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 13 residues within 4Å: Chain B: R.377 Chain F: G.151, V.152, G.153, K.154, T.155, V.156, R.181, Y.336, F.409, A.412, F.415 Ligands: MG.8 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:G.151, F:G.153, F:K.154, F:T.155, F:T.155, F:T.155, F:V.156 Salt bridges: F:R.181, F:R.181, B:R.377 pi-Stacking: F:Y.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demmer, J.K. et al., Structure of ATP synthase from ESKAPE pathogen Acinetobacter baumannii. Sci Adv (2022)

Release Date

2022-02-02

Peptides

ATP synthase subunit alpha: ABC
ATP synthase subunit beta: DEF
ATP synthase subunit c: GHIJKLMNOP
ATP synthase subunit a: Q
ATP synthase subunit b: RV
ATP synthase subunit delta: S
ATP synthase epsilon chain: T
ATP synthase gamma chain: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
J

J
K

K
L

L
O

M
P

N
Q

O
R

P
S

Q
a

R
b

V
p

S
d

T
e

U
g

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit alpha

ATP synthase subunit beta

ATP synthase subunit c

ATP synthase subunit a

ATP synthase subunit b

ATP synthase subunit delta

ATP synthase epsilon chain

ATP synthase gamma chain

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