SMTL ID : 7p70.1

The PDZ-domain of SNTB1 complexed with the PDZ-binding motif of HPV35-E6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: G.125, V.126, E.128 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:G.125, B:V.126, B:E.128, B:E.128 CA.2: 3 residues within 4Å: Chain B: K.163, L.166, E.171 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:K.163, B:E.171, H2O.2, H2O.4 CA.3: 6 residues within 4Å: Chain B: M.193, G.195, L.196, G.197, T.198, D.237 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.195, B:G.197, B:D.237, H2O.5, H2O.7 CA.4: 4 residues within 4Å: Chain B: G.277, R.280, G.282, E.322 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.277, B:R.280, B:E.322, H2O.8, H2O.9 CA.5: 4 residues within 4Å: Chain B: M.353, G.355, G.357, D.397 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:M.353, B:G.355, B:G.357, B:D.397, B:D.397

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain B: P.181, D.185, R.210, E.214, S.369, R.370, V.373 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.370, B:R.370 Water bridges: B:P.181, B:D.185 GOL.7: 9 residues within 4Å: Chain B: C.208, S.209, R.210, T.211, R.254, V.297, L.334, C.337, K.341 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.254, B:R.254, B:K.341 Water bridges: B:R.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogl, G. et al., Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun (2022)

Release Date

2022-07-27

Peptides

Protein E6: A
Beta-1-syntrophin,Annexin A2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Protein E6

Beta-1-syntrophin,Annexin A2

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