SMTL ID : 7p71.1 (1 other biounit)

The PDZ domain of MAGI1_2 complexed with the PDZ-binding motif of HPV35-E6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: M.366, G.368, G.370, D.410 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.366, A:G.368, A:G.370, A:D.410, A:D.410 CA.2: 5 residues within 4Å: Chain A: G.290, R.293, K.294, G.295, E.335 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.290, A:R.293, A:G.295, A:E.335, A:E.335 CA.3: 3 residues within 4Å: Chain A: K.176, L.179, E.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:K.176, A:L.179, A:E.184, A:E.184 CA.8: 3 residues within 4Å: Chain A: T.371, D.373 Ligands: CIT.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.371, A:D.373

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: C.221, S.222, R.223, T.224, R.267, V.310, L.347, K.354 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.267, A:R.267, A:K.354, A:K.354 GOL.5: 5 residues within 4Å: Chain A: E.269, G.271, D.275, R.308, S.309 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.271, A:D.275, A:S.309, A:S.309, A:S.309 GOL.6: 7 residues within 4Å: Chain A: P.194, D.198, R.223, E.227, S.382, R.383, V.386 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.383

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.7: 4 residues within 4Å: Chain A: T.371, R.372, D.373 Ligands: CA.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.372, A:D.373 Salt bridges: A:R.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogl, G. et al., Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun (2022)

Release Date

2022-07-27

Peptides

Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1,Annexin A2: A
Protein E6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1,Annexin A2

Protein E6

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