SMTL ID : 7p8u.1

Crystal Structure of leukotoxin LukE from Staphylococcus aureus in complex with p-cresyl sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: G.28, A.29, E.30, K.55, D.56, K.57, K.239 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.55, A:K.57, A:K.57, A:K.239, A:K.239 Water bridges: A:A.29, A:A.29

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 7 residues within 4Å: Chain A: T.76, F.78, R.210, D.216, L.219, V.223, Q.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.216

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.67, S.152, K.153, T.154 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.154 Water bridges: A:K.67, A:K.67, A:S.152 Salt bridges: A:K.67, A:K.153

3 x 6EI: (4-methylphenyl) hydrogen sulfate(Non-covalent)

6EI.4: 9 residues within 4Å: Chain A: K.42, W.43, R.75, I.93, R.253, L.255, F.277, R.280 Ligands: 6EI.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.255, A:F.277 Hydrogen bonds: A:K.42 Salt bridges: A:K.42, A:R.75, A:R.253, A:R.280 pi-Cation interactions: A:R.280 6EI.5: 8 residues within 4Å: Chain A: S.79, D.80, R.91, I.93, I.257, Y.259, F.277 Ligands: 6EI.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.93 Hydrogen bonds: A:Y.259 Water bridges: A:R.91 Salt bridges: A:R.91 pi-Cation interactions: A:R.91 6EI.6: 11 residues within 4Å: Chain A: Q.97, N.99, I.100, G.101, D.167, K.175, W.176, G.177, S.250, N.279, N.281 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.99, A:K.175, A:K.175 Hydrogen bonds: A:S.250, A:S.250 Water bridges: A:K.175, A:K.175, A:S.250, A:S.250, A:N.281, A:N.281 Salt bridges: A:K.175 pi-Cation interactions: A:K.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lambey, P. et al., Structural insights into recognition of chemokine receptors by Staphylococcus aureus leukotoxins. Elife (2022)

Release Date

2022-04-06

Peptides

Leucotoxin LukEv: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucotoxin LukEv

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