- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 4KX: 1,5 Dienoyl-CoA(Non-covalent)
4KX.2: 24 residues within 4Å:- Chain A: L.84, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371, R.375
- Chain B: F.270
- Ligands: FAD.1
19 PLIP interactions:18 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.84, A:L.133, A:Y.362, A:T.363, B:F.270
- Hydrogen bonds: A:S.131, A:L.133, A:S.177, A:S.239, A:S.239, A:R.242, A:T.363
- Water bridges: A:T.125, A:L.134, A:S.239, A:R.242
- Salt bridges: A:K.178, A:R.375, A:R.375
4KX.6: 24 residues within 4Å:- Chain A: F.270
- Chain B: L.84, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371, R.375
- Ligands: FAD.5
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.84, B:L.133, B:Y.362, B:T.363, A:F.270
- Hydrogen bonds: B:S.131, B:L.133, B:S.177, B:S.239, B:S.239, B:R.242, B:T.363
- Water bridges: B:T.125, B:L.134, B:S.239, B:R.242
- Salt bridges: B:K.178, B:R.375, B:R.375
4KX.10: 24 residues within 4Å:- Chain C: L.84, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371, R.375
- Chain D: F.270
- Ligands: FAD.9
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:L.84, C:L.133, C:Y.362, C:T.363, D:F.270
- Hydrogen bonds: C:S.131, C:L.133, C:S.177, C:S.239, C:S.239, C:R.242, C:T.363
- Water bridges: C:T.125, C:L.134, C:S.239, C:R.242
- Salt bridges: C:K.178, C:R.375, C:R.375
4KX.14: 24 residues within 4Å:- Chain C: F.270
- Chain D: L.84, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371, R.375
- Ligands: FAD.13
19 PLIP interactions:18 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.84, D:L.133, D:Y.362, D:T.363, C:F.270
- Hydrogen bonds: D:S.131, D:L.133, D:S.177, D:S.239, D:S.239, D:R.242, D:T.363
- Water bridges: D:T.125, D:L.134, D:S.239, D:R.242
- Salt bridges: D:K.178, D:R.375, D:R.375
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: D.286, M.287, A.290, R.329, V.330, D.333
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.329, A:R.329
- Water bridges: A:D.286, A:R.329
GOL.4: 7 residues within 4Å:- Chain A: Q.254, L.257, A.288, V.291, R.295
- Chain D: Y.315, L.377
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Hydrogen bonds: D:Y.315, A:Q.254, A:E.292, A:R.295, A:R.295
GOL.7: 6 residues within 4Å:- Chain B: D.286, M.287, A.290, R.329, V.330, D.333
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.329, B:R.329, B:D.333
- Water bridges: B:R.329
GOL.8: 7 residues within 4Å:- Chain B: Q.254, L.257, A.288, V.291, R.295
- Chain C: Y.315, L.377
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:Y.315, C:Y.315, B:Q.254, B:R.295, B:R.295
GOL.11: 6 residues within 4Å:- Chain C: D.286, M.287, A.290, R.329, V.330, D.333
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.329, C:R.329, C:D.333
- Water bridges: C:R.329
GOL.12: 7 residues within 4Å:- Chain B: Y.315, L.377
- Chain C: Q.254, L.257, A.288, V.291, R.295
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:Q.254, C:R.295, C:R.295, B:Y.315, B:Y.315
GOL.15: 6 residues within 4Å:- Chain D: D.286, M.287, A.290, R.329, V.330, D.333
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.329, D:R.329
- Water bridges: D:D.286, D:R.329
GOL.16: 7 residues within 4Å:- Chain A: Y.315, L.377
- Chain D: Q.254, L.257, A.288, V.291, R.295
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:Q.254, D:E.292, D:R.295, D:R.295, A:Y.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, J.W. et al., Structural Basis of Cyclic 1,3-Diene Forming Acyl-Coenzyme A Dehydrogenases. Chembiochem (2021)
- Release Date
- 2022-07-13
- Peptides
- Short-chain acyl-CoA dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 4KX: 1,5 Dienoyl-CoA(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, J.W. et al., Structural Basis of Cyclic 1,3-Diene Forming Acyl-Coenzyme A Dehydrogenases. Chembiochem (2021)
- Release Date
- 2022-07-13
- Peptides
- Short-chain acyl-CoA dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A