- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 4KW: 1-monoenoyl-CoA(Non-covalent)
4KW.2: 25 residues within 4Å:- Chain A: L.84, I.87, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, Q.236, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371
- Chain B: F.270
- Ligands: FAD.1
16 PLIP interactions:15 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.84, A:I.87, A:L.133, A:Y.362, A:T.363, B:F.270
- Hydrogen bonds: A:S.131, A:L.133, A:S.177, A:S.239, A:S.239, A:R.242, A:T.363
- Water bridges: A:L.134, A:R.242
- Salt bridges: A:K.178
4KW.6: 25 residues within 4Å:- Chain A: F.270
- Chain B: L.84, I.87, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, Q.236, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371
- Ligands: FAD.5
16 PLIP interactions:1 interactions with chain A, 15 interactions with chain B- Hydrophobic interactions: A:F.270, B:L.84, B:I.87, B:L.133, B:Y.362, B:T.363
- Hydrogen bonds: B:S.131, B:L.133, B:S.177, B:S.239, B:S.239, B:R.242, B:T.363
- Water bridges: B:L.134, B:R.242
- Salt bridges: B:K.178
4KW.10: 25 residues within 4Å:- Chain C: L.84, I.87, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, Q.236, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371
- Chain D: F.270
- Ligands: FAD.9
16 PLIP interactions:15 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:L.84, C:I.87, C:L.133, C:Y.362, C:T.363, D:F.270
- Hydrogen bonds: C:S.131, C:L.133, C:S.177, C:S.239, C:S.239, C:R.242, C:T.363
- Water bridges: C:L.134, C:R.242
- Salt bridges: C:K.178
4KW.14: 25 residues within 4Å:- Chain C: F.270
- Chain D: L.84, I.87, D.91, T.125, G.130, S.131, L.133, L.134, T.157, S.177, K.178, F.231, M.235, Q.236, L.238, S.239, N.241, R.242, Y.362, T.363, G.364, I.368, M.371
- Ligands: FAD.13
16 PLIP interactions:15 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.84, D:I.87, D:L.133, D:Y.362, D:T.363, C:F.270
- Hydrogen bonds: D:S.131, D:L.133, D:S.177, D:S.239, D:S.239, D:R.242, D:T.363
- Water bridges: D:L.134, D:R.242
- Salt bridges: D:K.178
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: A.278, F.282
- Chain B: R.375
- Chain C: A.278, F.282
- Chain D: R.375
- Ligands: GOL.11
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:R.375, D:R.375
GOL.4: 6 residues within 4Å:- Chain A: Q.254, L.257, A.288, V.291, E.292, R.295
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.254, A:R.295, A:R.295
- Water bridges: A:Q.254, A:Q.254
GOL.7: 7 residues within 4Å:- Chain A: R.375
- Chain B: A.278, F.282
- Chain C: R.375
- Chain D: A.278, F.282
- Ligands: GOL.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:R.375, C:R.375
GOL.8: 6 residues within 4Å:- Chain B: Q.254, L.257, A.288, V.291, E.292, R.295
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.254, B:R.295, B:R.295
- Water bridges: B:Q.254, B:Q.254
GOL.11: 7 residues within 4Å:- Chain A: A.278, F.282
- Chain B: R.375
- Chain C: A.278, F.282
- Chain D: R.375
- Ligands: GOL.3
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:R.375, D:R.375
GOL.12: 6 residues within 4Å:- Chain C: Q.254, L.257, A.288, V.291, E.292, R.295
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Q.254, C:R.295, C:R.295
- Water bridges: C:Q.254, C:Q.254
GOL.15: 7 residues within 4Å:- Chain A: R.375
- Chain B: A.278, F.282
- Chain C: R.375
- Chain D: A.278, F.282
- Ligands: GOL.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:R.375, C:R.375
GOL.16: 6 residues within 4Å:- Chain D: Q.254, L.257, A.288, V.291, E.292, R.295
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Q.254, D:R.295, D:R.295
- Water bridges: D:Q.254, D:Q.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, J.W. et al., Structural Basis of Cyclic 1,3-Diene Forming Acyl-Coenzyme A Dehydrogenases. Chembiochem (2021)
- Release Date
- 2022-07-13
- Peptides
- Short-chain acyl-CoA dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
DC
DD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 4KW: 1-monoenoyl-CoA(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, J.W. et al., Structural Basis of Cyclic 1,3-Diene Forming Acyl-Coenzyme A Dehydrogenases. Chembiochem (2021)
- Release Date
- 2022-07-13
- Peptides
- Short-chain acyl-CoA dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
DC
DD
D