SMTL ID : 7pb6.1 (1 other biounit)

Structure of LPMO domain of colonization factor GbpA from Vibrio cholerae in the presence of potassium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.1, A.96, H.98, F.170 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.1, A:H.98

5 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: D.47, D.162, V.163, T.166, A.167, A.168 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.162, A:V.163, A:T.166, H2O.6 K.3: 3 residues within 4Å: Chain A: G.34, A.35, Q.37 No protein-ligand interaction detected (PLIP) K.4: 1 residues within 4Å: Chain A: E.63 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.63, H2O.8, H2O.9 K.5: 4 residues within 4Å: Chain A: H.32, C.33, G.34, Q.37 No protein-ligand interaction detected (PLIP) K.6: 2 residues within 4Å: Chain A: D.47, T.52 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.47, A:D.47

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.7: 3 residues within 4Å: Chain A: P.139, K.140, R.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.141 SCN.8: 7 residues within 4Å: Chain A: Y.3, S.5, A.6, V.7, E.13, T.17, F.21 No protein-ligand interaction detected (PLIP) SCN.9: 3 residues within 4Å: Chain A: R.55, D.56, R.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjerregaard-Andersen, K. et al., Structure of LPMO domain of colonization factor GbpA from Vibrio cholerae in the presence of potassium. To Be Published

Release Date

2022-08-10

Peptides

GlcNAc-binding protein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GlcNAc-binding protein A

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