- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-1-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: T.48, R.200
- Ligands: ADP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.48
MG.4: 4 residues within 4Å:- Chain A: R.153
- Chain B: T.48, D.92
- Ligands: AGS.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.48
MG.6: 4 residues within 4Å:- Chain B: R.153
- Chain C: T.48, D.92
- Ligands: AGS.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.48
- 2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.3: 23 residues within 4Å:- Chain A: E.110, P.149, R.153
- Chain B: L.2, R.3, P.4, Y.10, I.11, P.43, G.44, L.45, G.46, K.47, T.48, T.49, T.141, Y.163, I.171, R.174, P.199, R.200, N.203
- Ligands: MG.4
18 PLIP interactions:2 interactions with chain A, 16 interactions with chain B- Hydrogen bonds: A:R.153, A:R.153, B:L.2, B:I.11, B:I.11, B:G.44, B:L.45, B:G.46, B:K.47, B:T.48, B:T.49, B:T.49, B:Y.163, B:N.203
- Salt bridges: B:R.3, B:K.47, B:R.200, B:R.200
AGS.5: 24 residues within 4Å:- Chain B: E.110, P.149, R.153
- Chain C: L.2, R.3, P.4, Y.10, I.11, P.43, G.44, L.45, G.46, K.47, T.48, T.49, E.93, T.141, Y.163, I.171, R.174, P.199, R.200, N.203
- Ligands: MG.6
20 PLIP interactions:18 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:L.2, C:I.11, C:G.44, C:L.45, C:G.46, C:K.47, C:T.48, C:T.49, C:T.49, C:Y.163, C:Y.163, C:R.200, C:R.200, C:N.203, B:R.153, B:R.153
- Salt bridges: C:R.3, C:K.47, C:R.200, C:R.200
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wald, J. et al., Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Nature (2022)
- Release Date
- 2022-09-14
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEF
Holliday junction ATP-dependent DNA helicase RuvA: G
Holliday junction ATP-dependent DNA helicase RuvA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-1-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wald, J. et al., Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Nature (2022)
- Release Date
- 2022-09-14
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEF
Holliday junction ATP-dependent DNA helicase RuvA: G
Holliday junction ATP-dependent DNA helicase RuvA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H