- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-2-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.2: 23 residues within 4Å:- Chain A: E.110, P.149, R.153
- Chain B: L.2, R.3, P.4, Y.10, I.11, P.43, G.44, L.45, G.46, K.47, T.48, T.49, T.141, Y.163, I.171, R.174, P.199, R.200, N.203
- Ligands: MG.3
20 PLIP interactions:18 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.2, B:I.11, B:G.44, B:L.45, B:G.46, B:K.47, B:T.48, B:T.49, B:T.49, B:Y.163, B:Y.163, B:R.200, B:R.200, B:N.203, A:R.153, A:R.153
- Salt bridges: B:R.3, B:K.47, B:R.200, B:R.200
AGS.4: 23 residues within 4Å:- Chain B: E.110, P.149, R.153
- Chain C: L.2, R.3, P.4, Y.10, I.11, P.43, G.44, L.45, G.46, K.47, T.48, T.49, T.141, Y.163, I.171, R.174, P.199, R.200, N.203
- Ligands: MG.5
20 PLIP interactions:18 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:L.2, C:I.11, C:G.44, C:L.45, C:G.46, C:K.47, C:T.48, C:T.49, C:T.49, C:Y.163, C:Y.163, C:R.200, C:R.200, C:N.203, B:R.153, B:R.153
- Salt bridges: C:R.3, C:K.47, C:R.200, C:R.200
AGS.6: 24 residues within 4Å:- Chain C: E.110, P.149, R.153
- Chain D: L.2, R.3, P.4, Y.10, I.11, Q.13, P.43, G.44, L.45, G.46, K.47, T.48, T.49, T.141, Y.163, I.171, R.174, P.199, R.200, N.203
- Ligands: MG.7
19 PLIP interactions:17 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:Y.10, D:G.44, D:L.45, D:G.46, D:K.47, D:T.48, D:T.49, D:T.49, D:Y.163, D:Y.163, D:R.200, D:R.200, D:N.203, C:R.153, C:R.153
- Salt bridges: D:R.3, D:K.47, D:R.200, D:R.200
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: R.153
- Chain B: T.48, D.92
- Ligands: AGS.2
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.48
MG.5: 4 residues within 4Å:- Chain B: R.153
- Chain C: T.48, D.92
- Ligands: AGS.4
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.48
MG.7: 3 residues within 4Å:- Chain D: T.48, R.200
- Ligands: AGS.6
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.48
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wald, J. et al., Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Nature (2022)
- Release Date
- 2022-09-14
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEF
Holliday junction ATP-dependent DNA helicase RuvA: GH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-2-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wald, J. et al., Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Nature (2022)
- Release Date
- 2022-09-14
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEF
Holliday junction ATP-dependent DNA helicase RuvA: GH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H