SMTL ID : 7pi0.1

Unstacked compact Dunaliella PSII

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
156 x CLA: CHLOROPHYLL A(Non-covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
16 x BCR: BETA-CAROTENE(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
10 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
4 x SPH: SPHINGOSINE(Non-covalent)
15 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
2 x C7Z: (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(Non-covalent)
8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
6 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)
6 x DGA: DIACYL GLYCEROL(Non-covalent)
19 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
46 x CHL: CHLOROPHYLL B(Non-covalent)
18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
2 x LPX: (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(Non-covalent)
4 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Caspy, I. et al., Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes. Elife (2023)
Release Date
2022-08-17
Peptides
Photosystem II protein D1: AZ
Photosystem II CP47 reaction center protein: B0
Photosystem II reaction center protein Ycf12: C1
Photosystem II CP43 reaction center protein: D2
Photosystem II D2 protein: E3
Cytochrome b559 subunit alpha: F4
Cytochrome b559 subunit beta: G5
Photosystem II reaction center protein H: H6
Photosystem II reaction center protein I: I7
Photosystem II reaction center protein J: J8
Photosystem II reaction center protein K: K9
Photosystem II reaction center protein L: La
PsbM: Mb
PsbO: Nc
PsbP: Od
Photosystem II reaction center protein T: Pe
PsbW: Qf
PsbX: Rg
Photosystem II reaction center protein Z: Sh
LHCII M3: Ti
Chlorophyll a-b binding protein, chloroplastic: Uj
CP29: Vk
CP26: Wl
LHCII M1: Xm
PsbU: Yn
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Z
a
B
B
0
b
C
V
1
v
D
C
2
c
E
D
3
d
F
E
4
e
G
F
5
f
H
H
6
h
I
I
7
i
J
J
8
j
K
K
9
k
L
L
a
l
M
M
b
m
N
O
c
o
O
P
d
p
P
T
e
t
Q
W
f
w
R
X
g
x
S
Z
h
z
T
N
i
n
U
G
j
g
V
R
k
r
W
S
l
s
X
Y
m
y
Y
U
n
u
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1

Toggle Identical (AZ)

Photosystem II CP47 reaction center protein

Toggle Identical (B0)

Photosystem II reaction center protein Ycf12

Toggle Identical (C1)

Photosystem II CP43 reaction center protein

Toggle Identical (D2)

Photosystem II D2 protein

Toggle Identical (E3)

Cytochrome b559 subunit alpha

Toggle Identical (F4)

Cytochrome b559 subunit beta

Toggle Identical (G5)

Photosystem II reaction center protein H

Toggle Identical (H6)

Photosystem II reaction center protein I

Toggle Identical (I7)

Photosystem II reaction center protein J

Toggle Identical (J8)

Photosystem II reaction center protein K

Toggle Identical (K9)

Photosystem II reaction center protein L

Toggle Identical (La)

PsbM

Toggle Identical (Mb)

PsbO

Toggle Identical (Nc)

PsbP

Toggle Identical (Od)

Photosystem II reaction center protein T

Toggle Identical (Pe)

PsbW

Toggle Identical (Qf)

PsbX

Toggle Identical (Rg)

Photosystem II reaction center protein Z

Toggle Identical (Sh)

LHCII M3

Toggle Identical (Ti)

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (Uj)

CP29

Toggle Identical (Vk)

CP26

Toggle Identical (Wl)

LHCII M1

Toggle Identical (Xm)

PsbU

Toggle Identical (Yn)

Related Entries With Identical Sequence

7pi5.1 | 7pin.1 | 7pin.2 | 7pin.3 | 7pin.4 | 7pin.5 | 7pin.6 | 7pin.7 | 7pin.8 | 7pin.9 | 7pin.10 | 7pin.11 | 7pin.12 | 7pin.13 | 7pin.14 | 7pin.15 | 7pin.16 | 7pin.17 | 7pin.18 | 7pin.19 | 7pin.20 | 7pin.21 | 7pin.22 | 7pin.23 | 7pin.24 | 7pin.25 | 7pin.26 | 7pin.27 | 7pin.28 | 7pin.29  more...