SMTL ID : 7pj3.1

Crystal structure of catalytic domain in open conformation of LytB from Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 4 residues within 4Å: Chain A: N.149, R.185, K.187, K.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.190

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 5 residues within 4Å: Chain A: E.137, K.140, L.144, K.269, L.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.140

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: N.229, Y.230, R.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.229 Water bridges: A:Y.230 PEG.4: 5 residues within 4Å: Chain A: V.84, A.88, D.252, Y.254, K.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.252, A:K.258 Water bridges: A:K.258

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: D.16, D.18, E.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.16, A:D.18, A:E.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Caballero, S. et al., Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep (2023)

Release Date

2022-09-07

Peptides

Putative endo-beta-N-acetylglucosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Putative endo-beta-N-acetylglucosaminidase

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