SMTL ID : 7plr.4 (3 other biounits)

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x E4Z: Baloxavir acid(Non-covalent)

E4Z.1: 13 residues within 4Å: Chain A: V.28, L.31, M.32, H.35, D.53, T.78, D.80, D.93, Y.94, K.95 Ligands: FMT.2, MN.3, MN.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.35 Hydrogen bonds: A:H.35, A:D.80, A:K.95 Water bridges: A:T.106

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: M.32, H.35, D.36, N.52 Ligands: E4Z.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.52

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 7 residues within 4Å: Chain A: H.35, D.80, D.93, Y.94, K.95 Ligands: E4Z.1, MN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.35, A:D.80, A:D.93, A:Y.94 MN.4: 5 residues within 4Å: Chain A: H.35, D.53, D.80 Ligands: E4Z.1, MN.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:D.80, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feracci, M. et al., Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir. To Be Published

Release Date

2022-09-14

Peptides

RNA-directed RNA polymerase L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
GGG

RNA-directed RNA polymerase L

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