SMTL ID : 7pmt.1

Human Cyclophilin D in complex with N-[(5-ethyl-4-oxo-1,2,3,4,5,6- hexahydro-1,5-benzodiazocin-8-yl)methyl]-7-methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, A.101, F.113, L.122, H.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.55 Water bridges: A:R.55 pi-Cation interactions: A:F.113

1 x 7UO: ~{N}-[(5-ethyl-4-oxidanylidene-1,2,3,6-tetrahydro-1,5-benzodiazocin-8-yl)methyl]-7-methyl-2-oxidanylidene-1,3-dihydropyrazolo[1,5-a]pyrimidine-6-carboxamide(Non-covalent)

7UO.2: 18 residues within 4Å: Chain A: H.54, R.55, Q.63, G.72, T.73, G.74, G.75, S.81, R.82, A.101, N.102, A.103, T.107, N.108, G.109, S.110, Q.111, S.149 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.55, A:R.82, A:A.103 Hydrogen bonds: A:R.55, A:Q.63, A:G.72, A:G.74, A:R.82, A:R.82 Water bridges: A:R.55, A:Q.111 pi-Cation interactions: A:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, D.O. et al., Human Cyclophilin D in complex with N-[(4-aminophenyl)methyl]-7-methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide. To Be Published

Release Date

2022-09-14

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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