SMTL ID : 7prw.1

The glucocorticoid receptor in complex with velsecorat, a PGC1a coactivator fragment and sgk 23bp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.37, C.40, C.54, C.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.40, A:C.54, A:C.57 ZN.2: 4 residues within 4Å: Chain A: C.73, C.79, C.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.73, A:C.79, A:C.89, A:C.92 ZN.6: 4 residues within 4Å: Chain B: C.37, C.40, C.54, C.57 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.37, B:C.40, B:C.54, B:C.57 ZN.7: 4 residues within 4Å: Chain B: C.73, C.79, C.89, C.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.73, B:C.79, B:C.89, B:C.92

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: C.73, G.75, R.76, N.77, Y.229, R.230 Chain B: R.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.85 EDO.5: 5 residues within 4Å: Chain A: R.76, E.153, Y.276 Chain B: R.76, D.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.76, A:Y.276, A:Y.276 EDO.8: 3 residues within 4Å: Chain B: C.73, G.75 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:C.73 EDO.9: 6 residues within 4Å: Chain A: D.78, I.80 Chain B: A.74, G.75, R.76 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.74 EDO.10: 6 residues within 4Å: Chain B: S.56, V.59, F.60, R.63 Chain D: T.14, G.15 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.56, B:R.63 EDO.12: 7 residues within 4Å: Chain A: K.87, N.88 Chain B: K.87, N.88, P.90 Chain D: T.13, T.14 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.88, B:K.87

2 x 82H: Velsecorat(Non-covalent)

82H.4: 25 residues within 4Å: Chain A: E.156, P.157, M.176, L.179, N.180, L.182, G.183, Q.186, A.190, W.216, L.219, M.220, A.223, L.224, R.227, F.239, M.255, Q.258, C.259, M.262, K.283, Y.351, C.352, T.355, F.365 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.179, A:Q.186, A:A.190, A:W.216, A:M.220, A:A.223, A:L.224, A:Y.351 Hydrogen bonds: A:N.180, A:Q.258, A:K.283 pi-Stacking: A:F.239, A:F.239 Halogen bonds: A:N.180 82H.11: 24 residues within 4Å: Chain B: P.157, M.176, L.179, N.180, L.182, G.183, Q.186, A.190, W.216, M.217, M.220, A.223, L.224, R.227, F.239, M.255, Q.258, C.259, M.262, K.283, Y.351, C.352, T.355, F.365 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.157, B:L.179, B:Q.186, B:W.216, B:M.220, B:A.223, B:L.224, B:Y.351 Hydrogen bonds: B:N.180, B:Q.186, B:Q.258, B:K.283 pi-Stacking: B:F.239, B:F.239, B:F.239 Halogen bonds: B:N.180, B:Y.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Postel, S. et al., Quaternary glucocorticoid receptor structure highlights allosteric interdomain communication. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-02-08

Peptides

Glucocorticoid receptor: AB
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
F

Glucocorticoid receptor

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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