- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: D.19, D.20, D.63, N.65, M.66
- Ligands: BEF.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.20, A:D.63, A:N.65, H2O.3, H2O.4
MG.6: 3 residues within 4Å:- Chain A: M.66, G.68, G.70
5 PLIP interactions:4 Ligand-Water interactions, 1 interactions with chain A- Metal complexes: H2O.2, H2O.7, H2O.8, H2O.8, A:M.66
MG.9: 8 residues within 4Å:- Chain B: D.19, D.20, E.21, D.63, N.65, M.66, K.92
- Ligands: BEF.8
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.20, B:D.20, B:D.63, B:N.65, H2O.12
MG.18: 3 residues within 4Å:- Chain B: M.66, G.68, G.70
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:G.68, H2O.17
- 3 x ZN: ZINC ION(Non-covalent)
ZN.3: 5 residues within 4Å:- Chain A: D.244, N.245, T.277, D.420, H.421
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.244, A:T.277, A:D.420, A:D.420, A:H.421
ZN.10: 6 residues within 4Å:- Chain B: D.244, N.245, T.277, D.420, H.421
- Ligands: BEF.19
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.244, B:D.244, B:D.420, B:D.420, B:H.421
ZN.11: 7 residues within 4Å:- Chain B: N.245, D.366, H.370, H.421, H.505
- Ligands: GOL.14, BEF.19
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.366, B:H.370, B:H.505
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: Y.13, L.128, Q.129, Q.130, H.131, S.132, I.133
- Chain B: E.260
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.131, A:S.132, A:S.132
- Water bridges: A:L.128, A:Q.130, B:K.523
GOL.12: 6 residues within 4Å:- Chain B: L.24, L.25, H.28, K.113, P.114, V.115
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.24, B:V.115, B:V.115
GOL.13: 4 residues within 4Å:- Chain B: G.434, D.435, R.436, N.439
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.435
GOL.14: 7 residues within 4Å:- Chain B: A.276, H.370, T.440, N.441, H.505
- Ligands: ZN.11, BEF.19
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.441
- Water bridges: B:H.370, B:N.441, B:H.505
- 4 x FMT: FORMIC ACID(Non-functional Binders)
FMT.5: 5 residues within 4Å:- Chain A: L.450, D.451, Y.452, P.454, K.476
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.452
FMT.15: 6 residues within 4Å:- Chain A: E.260
- Chain B: L.128, Q.129, Q.130, H.131, S.132
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.131, B:S.132
- Water bridges: B:Q.130
FMT.16: 4 residues within 4Å:- Chain B: T.14, Q.38, N.55, D.56
2 PLIP interactions:2 interactions with chain B- Water bridges: B:T.14, B:Q.38
FMT.17: 7 residues within 4Å:- Chain B: N.245, S.369, H.370, T.423, F.503, Q.504, H.505
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.245, B:N.245, B:S.369
- Water bridges: B:H.370, B:F.503
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 3 x ZN: ZINC ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
C