- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
BEF.2: 8 residues within 4Å:- Chain A: D.20, D.63, E.64, N.65, T.91, K.92, K.113
- Ligands: MG.1
No protein-ligand interaction detected (PLIP)BEF.10: 9 residues within 4Å:- Chain A: D.244, A.276, T.277, Q.278, D.366, H.421, H.505
- Ligands: ZN.3, ZN.4
No protein-ligand interaction detected (PLIP)BEF.15: 8 residues within 4Å:- Chain B: D.63, E.64, N.65, T.91, K.92, S.93, K.113
- Ligands: MG.14
No protein-ligand interaction detected (PLIP)BEF.23: 8 residues within 4Å:- Chain B: D.244, N.245, A.276, T.277, M.368, H.421, H.505
- Ligands: ZN.16
No protein-ligand interaction detected (PLIP)- 3 x ZN: ZINC ION(Non-covalent)
ZN.3: 7 residues within 4Å:- Chain A: D.244, N.245, T.277, R.281, D.420, H.421
- Ligands: BEF.10
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.244, A:D.244, A:T.277, A:D.420, A:H.421
ZN.4: 6 residues within 4Å:- Chain A: N.245, D.366, H.370, H.421, H.505
- Ligands: BEF.10
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.366, A:D.366, A:H.370, A:H.505, H2O.12
ZN.16: 7 residues within 4Å:- Chain B: D.244, N.245, T.277, R.281, D.420, H.421
- Ligands: BEF.23
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.244, B:T.277, B:D.420, B:D.420, B:H.421
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: L.24, L.25, H.28, K.113, P.114, V.115
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.28, A:V.115
GOL.6: 5 residues within 4Å:- Chain A: T.14, T.40, N.55, D.56, F.57
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.55
GOL.7: 7 residues within 4Å:- Chain A: R.11, P.12, Y.13, K.35, G.36, Y.37, Q.129
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.13, A:K.35, A:Q.129
- Water bridges: A:Y.37
GOL.17: 8 residues within 4Å:- Chain B: R.11, P.12, Y.13, K.35, G.36, Y.37, K.125, Q.129
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.13, B:G.36, B:Y.37, B:Q.129
- Water bridges: B:Y.37
- 7 x FMT: FORMIC ACID(Non-functional Binders)
FMT.8: 5 residues within 4Å:- Chain A: L.346, N.403, R.406, S.407, E.410
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.407
FMT.9: 5 residues within 4Å:- Chain A: L.128, Q.129, Q.130, H.131, S.132
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.131, A:S.132
- Water bridges: A:Q.130
FMT.18: 4 residues within 4Å:- Chain B: L.450, D.451, Y.452, P.454
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.452
FMT.19: 5 residues within 4Å:- Chain B: L.128, Q.129, Q.130, H.131, S.132
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.131, B:S.132, B:S.132
- Water bridges: B:L.128, B:L.128, B:Q.130
FMT.20: 7 residues within 4Å:- Chain A: N.116, Q.119
- Chain B: L.111, I.112, P.114, V.115, Q.119
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:N.116
- Hydrogen bonds: B:I.112
FMT.21: 5 residues within 4Å:- Chain A: Q.178, N.384, A.386, A.387
- Chain B: H.398
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:Q.178, A:N.384, B:H.398, B:H.398
- Water bridges: B:N.403, B:N.403, B:N.403
FMT.22: 6 residues within 4Å:- Chain A: K.106
- Chain B: T.138, N.141, F.171, W.172, E.175
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.141
- Water bridges: B:T.138
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
- 3 x ZN: ZINC ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 7 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D