SMTL ID : 7pwx.1 (1 other biounit)

dUTPase from M. tuberculosis in complex with Stl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-3-3-mer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 11 residues within 4Å: Chain A: L.60, H.62, P.79, Q.117 Chain B: L.60, H.62, P.79, Q.117 Chain C: L.60, H.62, Q.117 7 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: A:H.62, A:Q.117, C:H.62, C:Q.117, C:Q.117, B:H.62, B:Q.117 TRS.3: 13 residues within 4Å: Chain A: S.74, I.75, V.76 Chain B: S.74, I.75, V.76, S.78, L.97 Chain C: S.74, I.75, V.76, S.78, L.97 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:S.74, C:I.75, A:S.74, A:V.76, B:S.78

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain B: E.132 Chain C: F.55 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:F.55 EDO.6: 1 residues within 4Å: Ligands: PEG.4 No protein-ligand interaction detected (PLIP) EDO.7: 1 residues within 4Å: Ligands: PEG.4 No protein-ligand interaction detected (PLIP) EDO.9: 1 residues within 4Å: Chain E: Y.77 No protein-ligand interaction detected (PLIP) EDO.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain C: S.128 Ligands: EDO.6, EDO.7 No protein-ligand interaction detected (PLIP) PEG.8: 5 residues within 4Å: Chain B: G.85 Chain C: H.21 Chain E: N.95, K.96, Y.99 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:H.21, E:N.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanz-Frasquet, C. et al., The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases. Microbiol Spectr (2023)

Release Date

2022-12-28

Peptides

Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
Orf20: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
HHH

B
III

C
JJJ

D
EEE

E
FFF

F
GGG

Deoxyuridine 5'-triphosphate nucleotidohydrolase

Orf20

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