SMTL ID : 7pwx.2 (1 other biounit)

dUTPase from M. tuberculosis in complex with Stl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-3-3-mer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: E.126, V.127, S.128 Chain E: E.2 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.2 PEG.4: 9 residues within 4Å: Chain C: R.64, L.67, G.108, D.109, R.110 Chain D: Y.63, Y.109, D.110, D.113 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.64, C:R.64, C:R.110, D:Y.63, D:D.110

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 10 residues within 4Å: Chain A: S.74, I.75, V.76 Chain B: S.74, I.75, L.97 Chain C: S.74, I.75, V.76, L.97 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: A:S.74, C:S.74, C:I.75, B:S.74, B:V.76 TRS.3: 11 residues within 4Å: Chain A: L.60, H.62, P.79, Q.117 Chain B: L.60, H.62, Q.117 Chain C: L.60, H.62, P.79, Q.117 6 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:H.62, C:Q.117, C:Q.117, A:H.62, A:Q.117, B:H.62

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain E: T.21, Q.22, S.23, Q.33 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.22, E:S.23 EDO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanz-Frasquet, C. et al., The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases. Microbiol Spectr (2023)

Release Date

2022-12-28

Peptides

Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
Orf20: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
KKK

B
LLL

C
MMM

D
CCC

E
DDD

F
AAA

Deoxyuridine 5'-triphosphate nucleotidohydrolase

Orf20

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