SMTL ID : 7q1l.1 (1 other biounit)

Glycosilated Human Serum Apo-tranferrin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.410, K.411, S.412, E.420 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.345, H.346, H.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.346, A:H.347, A:H.347 GOL.3: 6 residues within 4Å: Chain A: T.449, R.453, Y.512, G.513, Y.514, T.515 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.453, A:Y.514, A:T.515 GOL.4: 7 residues within 4Å: Chain A: R.121, T.178, F.183, G.184, Y.185, S.186, G.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.121, A:Y.185, A:S.186, A:S.186, A:S.186 GOL.5: 7 residues within 4Å: Chain A: D.389, Y.423, R.453, T.454, Y.514, H.582, R.629 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.423, A:R.453, A:R.453, A:T.454, A:H.582, A:R.629 GOL.6: 6 residues within 4Å: Chain A: Y.92, R.121, S.122, A.123, Y.185, K.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.121, A:S.122, A:Y.185, A:K.203

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 8 residues within 4Å: Chain A: N.126, I.127, G.130, Y.316, A.319, I.320, L.323, R.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.126

1 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 2 residues within 4Å: Chain A: H.22, E.278 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campos-Escamilla, C. et al., X-ray Characterization of Conformational Changes of Human Apo- and Holo-Transferrin. Int J Mol Sci (2021)

Release Date

2022-03-16

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serotransferrin

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