SMTL ID : 7q1l.2 (1 other biounit)

Glycosilated Human Serum Apo-tranferrin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.410, S.412, D.413 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Y.423, R.453, T.454, A.455, Y.514, A.579, H.582, R.629 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.453, A:R.453, A:T.454, A:T.454 Water bridges: A:A.455 GOL.3: 6 residues within 4Å: Chain A: Y.92, R.121, S.122, A.123, Y.185, K.203 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.121, A:S.122, A:S.122, A:A.123, A:Y.185, A:Y.185, A:K.203

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 10 residues within 4Å: Chain A: G.62, S.122, N.126, I.127, G.130, Y.316, A.319, I.320, L.323, R.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.319

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.453, Y.512, G.513, Y.514 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.514 Salt bridges: A:R.453 SO4.6: 6 residues within 4Å: Chain A: R.121, F.183, G.184, Y.185, S.186, G.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.121, A:Y.185, A:S.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campos-Escamilla, C. et al., X-ray Characterization of Conformational Changes of Human Apo- and Holo-Transferrin. Int J Mol Sci (2021)

Release Date

2022-03-16

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serotransferrin

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