SMTL ID : 7qhg.1 (1 other biounit)

LIM domain kinase 2 (LIMK2) in complex with TH-470

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x T3B: 2-(2-methylpropanoylamino)-~{N}-[2-[(phenylmethyl)-[4-(phenylsulfamoyl)phenyl]carbonyl-amino]ethyl]-1,3-thiazole-5-carboxamide(Non-covalent)

T3B.1: 26 residues within 4Å: Chain A: L.10, V.31, K.33, E.34, M.53, L.56, V.61, L.62, F.64, L.76, T.78, E.79, Y.80, I.81, G.83, G.84, L.115, H.122, L.131, V.140, A.141, D.142, F.143, L.145, R.147 Ligands: EDO.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:K.33, A:K.33, A:K.33, A:V.61, A:L.62, A:L.76, A:T.78, A:L.115, A:D.142, A:L.145, A:R.147, A:R.147 Hydrogen bonds: A:T.78, A:I.81, A:I.81, A:D.142 Water bridges: A:M.53, A:F.64, A:T.78 pi-Cation interactions: A:K.33

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: M.2, H.23, K.28, M.30 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.26 EDO.3: 5 residues within 4Å: Chain A: F.15, Q.17, K.33, F.143 Ligands: T3B.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.17 EDO.4: 3 residues within 4Å: Chain A: F.14, K.33, F.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanke, T. et al., Development and Characterization of Type I, Type II, and Type III LIM-Kinase Chemical Probes. J.Med.Chem. (2022)

Release Date

2021-12-22

Peptides

LIM domain kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIM domain kinase 2

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