SMTL ID : 7qhg.2 (1 other biounit)

LIM domain kinase 2 (LIMK2) in complex with TH-470

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x T3B: 2-(2-methylpropanoylamino)-~{N}-[2-[(phenylmethyl)-[4-(phenylsulfamoyl)phenyl]carbonyl-amino]ethyl]-1,3-thiazole-5-carboxamide(Non-covalent)

T3B.1: 26 residues within 4Å: Chain A: L.10, V.31, K.33, E.34, I.36, M.53, L.56, V.61, L.62, F.64, L.76, T.78, E.79, Y.80, I.81, G.83, G.84, L.115, H.122, L.131, V.140, A.141, D.142, F.143, L.145, R.147 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:K.33, A:K.33, A:K.33, A:I.36, A:V.61, A:L.62, A:L.76, A:T.78, A:L.115, A:D.142, A:D.142, A:L.145, A:L.145, A:R.147 Hydrogen bonds: A:T.78, A:T.78, A:I.81, A:I.81, A:D.142 Water bridges: A:F.64

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.57, H.58, Y.114 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: A.113, Y.114, S.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.113 Water bridges: A:Y.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanke, T. et al., Development and Characterization of Type I, Type II, and Type III LIM-Kinase Chemical Probes. J.Med.Chem. (2022)

Release Date

2021-12-22

Peptides

LIM domain kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LIM domain kinase 2

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