SMTL ID : 7qiw.1

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x C- A: tRNA(Non-covalent)

C-A.1: 14 residues within 4Å: Chain c: G.39, K.40, Y.43, Q.53, K.55, P.56, V.57, F.58 Chain f: U.2767, C.2768, C.2769, U.2770, G.2797, G.2798 Protein-ligand interaction information (PLIP) not available

90 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

K.2: 3 residues within 4Å: Chain A: N.194, W.196, P.197 Ligand excluded by PLIP K.3: 6 residues within 4Å: Chain A: H.211, G.212, G.213, H.218, I.219 Chain f: A.2971 Ligand excluded by PLIP K.4: 4 residues within 4Å: Chain C: T.239, R.240 Chain f: C.2341, U.2343 Ligand excluded by PLIP K.7: 5 residues within 4Å: Chain I: K.156, F.157, F.159, G.161, Q.163 Ligand excluded by PLIP K.9: 4 residues within 4Å: Chain K: R.21, T.22, W.23, N.25 Ligand excluded by PLIP K.10: 5 residues within 4Å: Chain K: N.4, N.5 Chain f: A.679, C.1121, A.1122 Ligand excluded by PLIP K.15: 6 residues within 4Å: Chain 5: G.53, N.70, R.71, T.73, V.74 Chain f: G.1644 Ligand excluded by PLIP K.19: 5 residues within 4Å: Chain c: K.46, S.48, Y.50, G.51, T.54 Ligand excluded by PLIP K.22: 4 residues within 4Å: Chain f: G.344, A.345, A.362, A.363 Ligand excluded by PLIP K.23: 4 residues within 4Å: Chain f: U.976, A.977, U.1125, G.1126 Ligand excluded by PLIP K.24: 1 residues within 4Å: Chain f: C.3050 Ligand excluded by PLIP K.25: 4 residues within 4Å: Chain f: A.1500, A.1501, A.1502, C.1844 Ligand excluded by PLIP K.26: 4 residues within 4Å: Chain f: A.2147, G.2326, A.2327, G.2328 Ligand excluded by PLIP K.27: 6 residues within 4Å: Chain f: C.1601, G.1602, G.1603, C.1614, U.1615, G.1616 Ligand excluded by PLIP K.28: 4 residues within 4Å: Chain f: G.3056, C.3057, G.3091, C.3092 Ligand excluded by PLIP K.29: 3 residues within 4Å: Chain f: G.2373, G.2374, C.2377 Ligand excluded by PLIP K.30: 6 residues within 4Å: Chain f: G.1391, G.1392, C.1393, G.1436, U.1437, C.1438 Ligand excluded by PLIP K.31: 4 residues within 4Å: Chain f: U.1409, G.1411, U.1422, G.1423 Ligand excluded by PLIP K.32: 4 residues within 4Å: Chain f: G.2609, G.2610, G.2611, G.2612 Ligand excluded by PLIP K.33: 6 residues within 4Å: Ligands: MG.203 Chain f: A.1609, A.1610, U.1612, U.1840, A.1841 Ligand excluded by PLIP K.34: 6 residues within 4Å: Chain f: G.1395, U.1396, C.1397, G.1432, G.1433, C.1434 Ligand excluded by PLIP K.35: 5 residues within 4Å: Chain f: G.297, G.298, C.299, G.310, U.311 Ligand excluded by PLIP K.36: 5 residues within 4Å: Chain f: A.1010, G.1011, U.1063, U.1064 Chain g: A.101 Ligand excluded by PLIP K.37: 5 residues within 4Å: Chain f: U.1846, C.1849, C.1850, G.1857, G.1858 Ligand excluded by PLIP K.38: 5 residues within 4Å: Chain f: G.1221, U.1222, A.1306, G.1307, C.1308 Ligand excluded by PLIP K.39: 4 residues within 4Å: Chain f: G.947, A.972, G.973, U.2413 Ligand excluded by PLIP K.40: 5 residues within 4Å: Ligands: MG.349 Chain f: G.2428, U.2429, G.2607, U.2608 Ligand excluded by PLIP K.41: 4 residues within 4Å: Chain f: U.1600, C.1601, A.1701, C.1702 Ligand excluded by PLIP K.42: 4 residues within 4Å: Chain V: K.64 Chain f: U.3327, U.3361, G.3362 Ligand excluded by PLIP K.43: 5 residues within 4Å: Chain f: A.112, G.113, G.153, A.262, C.263 Ligand excluded by PLIP K.44: 5 residues within 4Å: Chain f: A.3328, A.3329, G.3330, C.3360, U.3361 Ligand excluded by PLIP K.45: 5 residues within 4Å: Chain f: U.2436, U.2437, C.2598, A.2599, U.2600 Ligand excluded by PLIP K.46: 3 residues within 4Å: Chain f: A.2355, G.2356, C.2357 Ligand excluded by PLIP K.47: 5 residues within 4Å: Chain f: C.1542, C.1590, G.1591 Chain h: U.117, G.119 Ligand excluded by PLIP K.48: 6 residues within 4Å: Chain A: K.198, V.199, R.200 Chain f: A.2151, A.2152, G.2190 Ligand excluded by PLIP K.49: 5 residues within 4Å: Chain f: G.125, G.126, C.127, G.137, U.138 Ligand excluded by PLIP K.50: 6 residues within 4Å: Chain M: V.80, Y.81, G.82 Chain f: A.32, A.820, U.821 Ligand excluded by PLIP K.51: 6 residues within 4Å: Chain f: G.412, G.413, G.414 Chain h: C.11, U.12, C.13 Ligand excluded by PLIP K.52: 6 residues within 4Å: Chain f: G.507, G.508, A.509, U.568, U.569, G.570 Ligand excluded by PLIP K.53: 6 residues within 4Å: Chain f: G.517, G.518, C.519, G.558, U.559, C.560 Ligand excluded by PLIP K.54: 4 residues within 4Å: Chain f: C.648, C.661, G.662, G.663 Ligand excluded by PLIP K.55: 6 residues within 4Å: Chain f: G.423, G.424, A.425, U.642, U.643, C.644 Ligand excluded by PLIP K.56: 5 residues within 4Å: Chain f: G.721, A.722, A.723, A.765, C.766 Ligand excluded by PLIP K.57: 6 residues within 4Å: Chain f: C.875, A.876, G.877, C.878, G.901, U.902 Ligand excluded by PLIP K.58: 5 residues within 4Å: Chain C: S.2, H.3, R.4 Chain f: G.2947, U.2948 Ligand excluded by PLIP K.59: 3 residues within 4Å: Chain f: G.213, U.214, A.218 Ligand excluded by PLIP K.60: 4 residues within 4Å: Chain f: A.396, U.401, U.402, G.1428 Ligand excluded by PLIP K.61: 6 residues within 4Å: Chain f: G.409, U.410, C.411 Chain h: G.14, G.15, C.16 Ligand excluded by PLIP K.62: 6 residues within 4Å: Chain Z: K.11, G.18 Chain f: A.1123, G.1124, G.1382, G.1383 Ligand excluded by PLIP K.63: 5 residues within 4Å: Chain M: K.83, T.85 Chain f: U.42, A.43, U.44 Ligand excluded by PLIP K.64: 4 residues within 4Å: Chain f: U.902, C.903, U.2137, G.2138 Ligand excluded by PLIP K.65: 7 residues within 4Å: Ligands: MG.126 Chain f: U.881, A.882, U.2145, A.2146, A.2980, G.2981 Ligand excluded by PLIP K.66: 7 residues within 4Å: Ligands: MG.221 Chain f: A.1540, C.1542, A.1592, G.1595, G.1596, G.1597 Ligand excluded by PLIP K.67: 5 residues within 4Å: Chain f: A.1906, A.1907, G.1908, U.1909, G.1912 Ligand excluded by PLIP K.68: 5 residues within 4Å: Chain f: C.2200, U.2203, G.2204, U.2244, A.2247 Ligand excluded by PLIP K.69: 4 residues within 4Å: Chain f: C.2200, A.2201, G.2202, A.2245 Ligand excluded by PLIP K.70: 5 residues within 4Å: Chain f: G.2406, G.2820, A.2824, U.2873, C.2874 Ligand excluded by PLIP K.71: 4 residues within 4Å: Chain f: U.2635, G.2636, U.2637, C.2650 Ligand excluded by PLIP K.72: 3 residues within 4Å: Chain f: A.2666, G.2667, A.2708 Ligand excluded by PLIP K.73: 8 residues within 4Å: Chain I: R.7 Chain f: U.2831, G.2832, U.2833, G.2834, G.2835, C.2861, U.2862 Ligand excluded by PLIP K.74: 6 residues within 4Å: Chain U: I.45, K.46, G.47 Chain f: U.2920, C.2935, U.2939 Ligand excluded by PLIP K.75: 5 residues within 4Å: Chain f: U.673, C.674, G.809, A.811, C.812 Ligand excluded by PLIP K.76: 5 residues within 4Å: Chain A: G.2, R.3 Chain f: G.918, G.919, G.2612 Ligand excluded by PLIP K.77: 4 residues within 4Å: Chain f: C.1012, U.1016, G.1017, C.1057 Ligand excluded by PLIP K.78: 6 residues within 4Å: Chain f: G.689, U.690, C.691, G.713, G.714, C.715 Ligand excluded by PLIP K.79: 6 residues within 4Å: Chain f: G.2164, G.2165, U.2166, A.2175, U.2176, G.2177 Ligand excluded by PLIP K.80: 4 residues within 4Å: Chain f: G.934, A.935, A.2416, G.2417 Ligand excluded by PLIP K.81: 5 residues within 4Å: Ligands: MG.191 Chain f: C.969, U.2801, C.2802, G.2804 Ligand excluded by PLIP K.82: 4 residues within 4Å: Chain f: G.917, G.918, A.935, A.936 Ligand excluded by PLIP K.83: 6 residues within 4Å: Chain f: U.1537, C.1538, G.1539, A.1540, U.1837, C.1838 Ligand excluded by PLIP K.84: 3 residues within 4Å: Chain f: U.651, C.652, G.950 Ligand excluded by PLIP K.85: 3 residues within 4Å: Chain f: C.652, A.660, G.2820 Ligand excluded by PLIP K.86: 6 residues within 4Å: Chain f: C.834, U.835, G.836, U.909, G.910, G.911 Ligand excluded by PLIP K.87: 5 residues within 4Å: Chain f: G.437, A.499, C.627, C.628, G.632 Ligand excluded by PLIP K.88: 5 residues within 4Å: Chain f: A.692, G.695, C.708, G.709, U.710 Ligand excluded by PLIP K.89: 4 residues within 4Å: Chain f: G.1666, C.1667, G.1792, G.1793 Ligand excluded by PLIP K.90: 5 residues within 4Å: Chain f: A.1893, U.1894, G.1895, C.2349, U.2350 Ligand excluded by PLIP K.91: 3 residues within 4Å: Chain f: G.2689, U.2690, G.2691 Ligand excluded by PLIP K.92: 5 residues within 4Å: Chain f: G.2396, G.2397, A.2950, G.2951, A.2986 Ligand excluded by PLIP K.93: 6 residues within 4Å: Chain f: G.3001, U.3002, G.3003, C.3150, G.3151, C.3152 Ligand excluded by PLIP K.94: 5 residues within 4Å: Chain f: C.3209, U.3211, G.3212, C.3251, C.3252 Ligand excluded by PLIP K.95: 4 residues within 4Å: Chain f: A.339 Chain h: A.24, U.25, C.26 Ligand excluded by PLIP K.96: 5 residues within 4Å: Chain c: R.45 Chain f: U.275, U.276, U.283, G.284 Ligand excluded by PLIP K.97: 5 residues within 4Å: Chain f: G.836, G.1595, G.1596, C.1661, A.1803 Ligand excluded by PLIP K.98: 4 residues within 4Å: Chain f: G.2188, A.2246, A.2247, U.2317 Ligand excluded by PLIP K.99: 6 residues within 4Å: Chain O: G.66, V.67, G.68 Chain f: C.2353, C.2392, A.2393 Ligand excluded by PLIP K.100: 5 residues within 4Å: Chain f: G.3012, U.3013, G.3138, G.3139, C.3140 Ligand excluded by PLIP K.368: 4 residues within 4Å: Chain h: G.51, U.52, U.60, G.61 Ligand excluded by PLIP K.369: 5 residues within 4Å: Chain h: G.70, G.71, A.97, U.98, C.99 Ligand excluded by PLIP K.370: 4 residues within 4Å: Chain h: G.44, A.45, U.107, G.108 Ligand excluded by PLIP

276 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.5: 2 residues within 4Å: Chain C: R.4, E.7 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.7, C:E.7, H2O.4, H2O.4, H2O.68 MG.6: 3 residues within 4Å: Chain F: Q.110, Q.206 Chain f: C.1346 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain I: N.14 Chain f: U.1136, G.1137, G.1138 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain K: K.13 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain O: Y.131, R.132 Chain f: C.891, G.1518 6 PLIP interactions: 1 interactions with chain O, 5 Ligand-Water interactions Metal complexes: O:Y.131, H2O.14, H2O.26, H2O.32, H2O.75, H2O.100 MG.13: 3 residues within 4Å: Chain Q: A.87 Chain f: G.842, A.1870 5 PLIP interactions: 1 interactions with chain Q, 4 Ligand-Water interactions Metal complexes: Q:A.87, H2O.15, H2O.58, H2O.89, H2O.122 MG.14: 1 residues within 4Å: Chain U: N.50 No protein-ligand interaction detected (PLIP) MG.16: 1 residues within 4Å: Chain 8: S.32 6 PLIP interactions: 1 interactions with chain 8, 5 Ligand-Water interactions Metal complexes: 8:S.32, H2O.22, H2O.22, H2O.22, H2O.150, H2O.151 MG.105: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.106: 1 residues within 4Å: Chain K: R.69 No protein-ligand interaction detected (PLIP) MG.107: 1 residues within 4Å: Chain f: G.101 No protein-ligand interaction detected (PLIP) MG.108: 3 residues within 4Å: Chain f: G.74, A.75, U.76 No protein-ligand interaction detected (PLIP) MG.109: 1 residues within 4Å: Chain f: A.98 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain f: A.157, G.252 No protein-ligand interaction detected (PLIP) MG.111: 3 residues within 4Å: Chain f: G.156, A.157, A.158 No protein-ligand interaction detected (PLIP) MG.112: 2 residues within 4Å: Chain f: G.201, C.202 No protein-ligand interaction detected (PLIP) MG.113: 3 residues within 4Å: Chain f: G.2412, U.2413, U.2414 No protein-ligand interaction detected (PLIP) MG.114: 4 residues within 4Å: Chain f: C.263, G.264, A.314, A.315 No protein-ligand interaction detected (PLIP) MG.115: 1 residues within 4Å: Chain c: S.48 No protein-ligand interaction detected (PLIP) MG.116: 5 residues within 4Å: Chain f: G.327, G.328, C.329 Chain h: G.36, C.37 No protein-ligand interaction detected (PLIP) MG.117: 1 residues within 4Å: Chain f: G.355 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain f: A.406, U.407 Chain h: A.18 No protein-ligand interaction detected (PLIP) MG.119: 2 residues within 4Å: Chain f: U.682, A.801 No protein-ligand interaction detected (PLIP) MG.120: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.121: 3 residues within 4Å: Chain f: G.724, C.725, A.765 No protein-ligand interaction detected (PLIP) MG.122: 2 residues within 4Å: Chain f: A.830, U.831 No protein-ligand interaction detected (PLIP) MG.123: 1 residues within 4Å: Chain f: G.867 No protein-ligand interaction detected (PLIP) MG.124: 2 residues within 4Å: Chain f: A.868, G.869 No protein-ligand interaction detected (PLIP) MG.125: 4 residues within 4Å: Chain f: A.880, U.2140, U.2141, A.2146 No protein-ligand interaction detected (PLIP) MG.126: 3 residues within 4Å: Ligands: K.65 Chain f: A.882, G.2981 No protein-ligand interaction detected (PLIP) MG.127: 3 residues within 4Å: Chain W: R.54 Chain f: C.13, A.14 No protein-ligand interaction detected (PLIP) MG.128: 2 residues within 4Å: Chain f: G.31, U.275 No protein-ligand interaction detected (PLIP) MG.129: 2 residues within 4Å: Chain f: A.38, U.2414 No protein-ligand interaction detected (PLIP) MG.130: 3 residues within 4Å: Chain f: A.37, G.39, C.40 No protein-ligand interaction detected (PLIP) MG.131: 4 residues within 4Å: Chain f: G.39, C.40, U.2414, G.2415 No protein-ligand interaction detected (PLIP) MG.132: 3 residues within 4Å: Chain K: K.14 Ligands: SPM.102 Chain f: A.47 No protein-ligand interaction detected (PLIP) MG.133: 2 residues within 4Å: Chain f: A.49, A.50 No protein-ligand interaction detected (PLIP) MG.134: 3 residues within 4Å: Chain f: A.21, G.54, A.55 No protein-ligand interaction detected (PLIP) MG.135: 3 residues within 4Å: Chain M: V.155 Chain f: A.60, A.61 No protein-ligand interaction detected (PLIP) MG.136: 2 residues within 4Å: Chain f: A.61, U.319 No protein-ligand interaction detected (PLIP) MG.137: 4 residues within 4Å: Chain f: A.83, G.84, G.714, C.715 No protein-ligand interaction detected (PLIP) MG.138: 2 residues within 4Å: Chain f: A.185, C.223 No protein-ligand interaction detected (PLIP) MG.139: 3 residues within 4Å: Chain c: G.49 Chain f: U.273, G.274 No protein-ligand interaction detected (PLIP) MG.140: 3 residues within 4Å: Chain f: A.58, A.322, U.323 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain f: C.336, C.337, G.1440 No protein-ligand interaction detected (PLIP) MG.142: 4 residues within 4Å: Chain B: G.102, G.103 Chain f: A.341, G.342 No protein-ligand interaction detected (PLIP) MG.143: 3 residues within 4Å: Chain f: A.341, G.342, A.345 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain f: G.355, G.1851 No protein-ligand interaction detected (PLIP) MG.145: 4 residues within 4Å: Chain f: C.400, U.401, U.402, G.403 No protein-ligand interaction detected (PLIP) MG.146: 3 residues within 4Å: Chain f: A.2960, G.2961, A.2980 No protein-ligand interaction detected (PLIP) MG.147: 5 residues within 4Å: Chain f: G.926, G.934, A.2960, G.2961, A.2962 No protein-ligand interaction detected (PLIP) MG.148: 4 residues within 4Å: Chain f: A.925, G.926, G.2961, A.2962 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain f: U.952, G.1445 No protein-ligand interaction detected (PLIP) MG.150: 2 residues within 4Å: Chain f: C.814, A.943 No protein-ligand interaction detected (PLIP) MG.151: 2 residues within 4Å: Chain f: A.816, G.944 No protein-ligand interaction detected (PLIP) MG.152: 4 residues within 4Å: Chain f: A.2405, G.2406, C.2874, G.2875 No protein-ligand interaction detected (PLIP) MG.153: 5 residues within 4Å: Chain f: A.660, C.661, A.2400, A.2876, U.2877 No protein-ligand interaction detected (PLIP) MG.154: 3 residues within 4Å: Chain f: A.2401, U.2877, G.2878 No protein-ligand interaction detected (PLIP) MG.155: 3 residues within 4Å: Chain f: U.2948, G.2949, A.2950 No protein-ligand interaction detected (PLIP) MG.156: 3 residues within 4Å: Chain f: C.2946, G.2947, U.2948 No protein-ligand interaction detected (PLIP) MG.157: 4 residues within 4Å: Chain f: G.2403, A.2404, U.2877, G.2878 No protein-ligand interaction detected (PLIP) MG.158: 3 residues within 4Å: Chain f: G.2878, G.2949, A.2950 No protein-ligand interaction detected (PLIP) MG.159: 4 residues within 4Å: Chain f: C.659, A.2376, C.2377, G.2378 No protein-ligand interaction detected (PLIP) MG.160: 4 residues within 4Å: Chain 3: D.40 Chain f: U.651, A.656, A.660 4 PLIP interactions: 1 interactions with chain 3, 3 Ligand-Water interactions Metal complexes: 3:D.40, H2O.28, H2O.54, H2O.82 MG.161: 5 residues within 4Å: Chain 3: D.40 Chain f: U.653, A.656, G.1153, A.1154 No protein-ligand interaction detected (PLIP) MG.162: 4 residues within 4Å: Chain f: G.973, G.1126, G.1127, A.2821 No protein-ligand interaction detected (PLIP) MG.163: 3 residues within 4Å: Chain f: G.1126, G.1127, G.1128 No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain f: G.2406, A.2407 No protein-ligand interaction detected (PLIP) MG.165: 4 residues within 4Å: Chain f: C.652, U.949, A.972, A.2821 No protein-ligand interaction detected (PLIP) MG.166: 5 residues within 4Å: Chain f: G.655, A.2375, G.2820, A.2821, U.2872 No protein-ligand interaction detected (PLIP) MG.167: 5 residues within 4Å: Chain f: G.2820, A.2821, C.2870, C.2871, U.2872 No protein-ligand interaction detected (PLIP) MG.168: 4 residues within 4Å: Chain P: A.7 Chain f: C.959, G.960, G.1379 No protein-ligand interaction detected (PLIP) MG.169: 3 residues within 4Å: Chain f: C.959, A.1378, G.1379 No protein-ligand interaction detected (PLIP) MG.170: 2 residues within 4Å: Chain Z: H.14 Chain f: A.1381 No protein-ligand interaction detected (PLIP) MG.171: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.172: 4 residues within 4Å: Chain f: U.34, G.819, G.2614, U.2615 No protein-ligand interaction detected (PLIP) MG.173: 1 residues within 4Å: Chain f: G.2610 No protein-ligand interaction detected (PLIP) MG.174: 4 residues within 4Å: Chain f: G.301, C.2780, G.2781, G.2782 No protein-ligand interaction detected (PLIP) MG.175: 3 residues within 4Å: Chain f: A.668, G.669, C.1443 No protein-ligand interaction detected (PLIP) MG.176: 1 residues within 4Å: Chain f: U.1178 No protein-ligand interaction detected (PLIP) MG.177: 3 residues within 4Å: Chain G: K.133 Chain f: A.148, G.149 No protein-ligand interaction detected (PLIP) MG.178: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.179: 5 residues within 4Å: Chain f: A.1161, U.1162, G.1163, C.1211, A.1212 No protein-ligand interaction detected (PLIP) MG.180: 5 residues within 4Å: Chain N: K.30 Chain f: C.1186, A.1188, A.1189, A.1190 No protein-ligand interaction detected (PLIP) MG.181: 2 residues within 4Å: Chain f: C.1167, G.1168 No protein-ligand interaction detected (PLIP) MG.182: 4 residues within 4Å: Chain f: C.871, C.872, C.903, U.904 No protein-ligand interaction detected (PLIP) MG.183: 4 residues within 4Å: Chain f: C.872, C.873, U.902, C.903 No protein-ligand interaction detected (PLIP) MG.184: 2 residues within 4Å: Chain f: G.2134, C.2136 No protein-ligand interaction detected (PLIP) MG.185: 3 residues within 4Å: Chain f: U.881, U.2145, A.2146 No protein-ligand interaction detected (PLIP) MG.186: 4 residues within 4Å: Chain f: U.2141, A.2142, U.2144, U.2145 No protein-ligand interaction detected (PLIP) MG.187: 2 residues within 4Å: Chain f: G.2968, G.2970 No protein-ligand interaction detected (PLIP) MG.188: 3 residues within 4Å: Chain f: G.2154, A.2191, U.2192 No protein-ligand interaction detected (PLIP) MG.189: 2 residues within 4Å: Chain f: G.2314, G.2965 No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain f: G.1415, G.1417 No protein-ligand interaction detected (PLIP) MG.191: 5 residues within 4Å: Ligands: K.81 Chain f: C.968, C.2802, A.2803, G.2804 No protein-ligand interaction detected (PLIP) MG.192: 2 residues within 4Å: Chain f: C.971, G.2412 No protein-ligand interaction detected (PLIP) MG.193: 4 residues within 4Å: Chain f: A.2640, A.2641, A.2642, A.2644 No protein-ligand interaction detected (PLIP) MG.194: 3 residues within 4Å: Chain f: A.2642, G.2643, A.2644 No protein-ligand interaction detected (PLIP) MG.195: 3 residues within 4Å: Chain f: G.1006, U.1007, A.2640 No protein-ligand interaction detected (PLIP) MG.196: 3 residues within 4Å: Chain f: G.1488, C.1489, U.1877 No protein-ligand interaction detected (PLIP) MG.197: 5 residues within 4Å: Chain f: C.1489, C.1490, G.1491, C.1876, U.1877 No protein-ligand interaction detected (PLIP) MG.198: 1 residues within 4Å: Chain f: C.1490 No protein-ligand interaction detected (PLIP) MG.199: 3 residues within 4Å: Chain f: A.2405, G.2819, G.2875 No protein-ligand interaction detected (PLIP) MG.200: 3 residues within 4Å: Chain f: G.662, G.663, A.2364 No protein-ligand interaction detected (PLIP) MG.201: 5 residues within 4Å: Chain 3: T.28 Chain f: A.668, C.1443, A.1444, G.1445 No protein-ligand interaction detected (PLIP) MG.202: 4 residues within 4Å: Chain f: A.671, G.1440, U.1441, G.1442 No protein-ligand interaction detected (PLIP) MG.203: 5 residues within 4Å: Chain 5: R.10 Ligands: K.33 Chain f: A.1610, A.1841, C.1842 No protein-ligand interaction detected (PLIP) MG.204: 3 residues within 4Å: Chain f: A.1609, A.1610, C.1842 No protein-ligand interaction detected (PLIP) MG.205: 3 residues within 4Å: Chain f: C.1507, C.1508, C.1525 No protein-ligand interaction detected (PLIP) MG.206: 3 residues within 4Å: Chain O: R.128 Chain f: C.1519, A.1520 No protein-ligand interaction detected (PLIP) MG.207: 3 residues within 4Å: Chain f: A.1464, A.1465, U.1466 No protein-ligand interaction detected (PLIP) MG.208: 1 residues within 4Å: Chain f: C.1527 No protein-ligand interaction detected (PLIP) MG.209: 3 residues within 4Å: Chain W: T.124 Chain f: A.1535, U.1840 No protein-ligand interaction detected (PLIP) MG.210: 2 residues within 4Å: Chain a: K.48 Chain f: C.1850 No protein-ligand interaction detected (PLIP) MG.211: 7 residues within 4Å: Chain O: G.135 Chain f: A.892, A.893, A.931, G.1851, C.1852, C.1855 No protein-ligand interaction detected (PLIP) MG.212: 5 residues within 4Å: Chain f: A.1901, A.1902, G.1904, G.1905, G.2338 No protein-ligand interaction detected (PLIP) MG.213: 3 residues within 4Å: Chain f: G.2276, G.2314, U.2966 No protein-ligand interaction detected (PLIP) MG.214: 4 residues within 4Å: Chain f: G.570, U.571, G.572, G.573 No protein-ligand interaction detected (PLIP) MG.215: 4 residues within 4Å: Chain C: H.246 Chain f: U.884, G.885, U.2953 No protein-ligand interaction detected (PLIP) MG.216: 3 residues within 4Å: Chain f: U.884, G.885, C.887 No protein-ligand interaction detected (PLIP) MG.217: 3 residues within 4Å: Chain f: C.1913, A.1914, A.1915 No protein-ligand interaction detected (PLIP) MG.218: 2 residues within 4Å: Chain f: A.1009, A.1010 No protein-ligand interaction detected (PLIP) MG.219: 2 residues within 4Å: Chain f: A.1460, G.1461 No protein-ligand interaction detected (PLIP) MG.220: 4 residues within 4Å: Chain f: U.1459, A.1460, U.2352, A.2393 No protein-ligand interaction detected (PLIP) MG.221: 4 residues within 4Å: Chain 5: S.17 Ligands: K.66 Chain f: G.1595, G.1597 No protein-ligand interaction detected (PLIP) MG.222: 3 residues within 4Å: Chain f: C.1543, C.1590, G.1591 No protein-ligand interaction detected (PLIP) MG.223: 2 residues within 4Å: Chain f: A.1902, G.1903 No protein-ligand interaction detected (PLIP) MG.224: 4 residues within 4Å: Chain f: A.1907, G.1908, U.1909, A.2923 No protein-ligand interaction detected (PLIP) MG.225: 2 residues within 4Å: Chain f: G.1908, U.1909 No protein-ligand interaction detected (PLIP) MG.226: 4 residues within 4Å: Chain f: C.1910, G.1911, U.2924, U.2925 No protein-ligand interaction detected (PLIP) MG.227: 3 residues within 4Å: Chain f: U.2331, C.2332, U.2924 No protein-ligand interaction detected (PLIP) MG.228: 1 residues within 4Å: Chain f: A.2129 No protein-ligand interaction detected (PLIP) MG.229: 4 residues within 4Å: Chain f: U.2196, C.2198, A.2315, A.2316 No protein-ligand interaction detected (PLIP) MG.230: 3 residues within 4Å: Chain f: A.2235, A.2236, G.2237 No protein-ligand interaction detected (PLIP) MG.231: 3 residues within 4Å: Chain f: U.2277, A.2278, G.2314 No protein-ligand interaction detected (PLIP) MG.232: 4 residues within 4Å: Chain f: C.2281, A.2282, G.2286, G.2308 No protein-ligand interaction detected (PLIP) MG.233: 1 residues within 4Å: Chain f: A.2282 No protein-ligand interaction detected (PLIP) MG.234: 3 residues within 4Å: Chain f: C.2362, G.2403, A.2404 No protein-ligand interaction detected (PLIP) MG.235: 6 residues within 4Å: Chain f: A.2416, G.2417, C.2418, U.2617, G.2809, U.2810 No protein-ligand interaction detected (PLIP) MG.236: 4 residues within 4Å: Chain A: P.206, P.210 Chain f: U.2419, G.2611 No protein-ligand interaction detected (PLIP) MG.237: 1 residues within 4Å: Chain f: C.2517 No protein-ligand interaction detected (PLIP) MG.238: 3 residues within 4Å: Chain D: A.32 Chain f: A.2666, A.2751 No protein-ligand interaction detected (PLIP) MG.239: 2 residues within 4Å: Chain f: U.2833, G.2835 No protein-ligand interaction detected (PLIP) MG.240: 2 residues within 4Å: Chain f: A.2906, A.2907 No protein-ligand interaction detected (PLIP) MG.241: 3 residues within 4Å: Chain f: G.2954, G.2955, G.2956 No protein-ligand interaction detected (PLIP) MG.242: 1 residues within 4Å: Chain f: G.888 No protein-ligand interaction detected (PLIP) MG.243: 2 residues within 4Å: Chain f: C.3129, A.3130 No protein-ligand interaction detected (PLIP) MG.244: 2 residues within 4Å: Chain f: A.3112, C.3123 No protein-ligand interaction detected (PLIP) MG.245: 5 residues within 4Å: Chain Z: H.39 Chain f: C.968, C.969, G.2804, A.2805 No protein-ligand interaction detected (PLIP) MG.246: 2 residues within 4Å: Chain f: G.2415, A.2416 No protein-ligand interaction detected (PLIP) MG.247: 3 residues within 4Å: Chain f: A.826, A.827, U.913 No protein-ligand interaction detected (PLIP) MG.248: 2 residues within 4Å: Chain f: A.882, U.898 No protein-ligand interaction detected (PLIP) MG.249: 2 residues within 4Å: Chain Z: P.29 Chain f: G.974 No protein-ligand interaction detected (PLIP) MG.250: 3 residues within 4Å: Chain f: A.3049, C.3095, U.3098 No protein-ligand interaction detected (PLIP) MG.251: 3 residues within 4Å: Chain f: A.1144, C.2870, C.2871 No protein-ligand interaction detected (PLIP) MG.252: 4 residues within 4Å: Chain f: U.2739, G.2758, C.2759, C.2760 No protein-ligand interaction detected (PLIP) MG.253: 2 residues within 4Å: Chain f: C.2200, A.2201 No protein-ligand interaction detected (PLIP) MG.254: 1 residues within 4Å: Chain f: G.227 No protein-ligand interaction detected (PLIP) MG.255: 1 residues within 4Å: Chain f: G.1377 No protein-ligand interaction detected (PLIP) MG.256: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.257: 3 residues within 4Å: Chain f: A.3074, A.3075, A.3076 No protein-ligand interaction detected (PLIP) MG.258: 1 residues within 4Å: Chain f: G.3319 No protein-ligand interaction detected (PLIP) MG.259: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.260: 3 residues within 4Å: Chain f: G.663, U.1447, C.1448 No protein-ligand interaction detected (PLIP) MG.261: 2 residues within 4Å: Chain f: A.63, A.64 No protein-ligand interaction detected (PLIP) MG.262: 6 residues within 4Å: Chain f: A.1755, A.1757, G.1758, C.1759, G.1777, U.1778 No protein-ligand interaction detected (PLIP) MG.263: 3 residues within 4Å: Chain 8: Q.30 Chain f: A.826, A.827 No protein-ligand interaction detected (PLIP) MG.264: 2 residues within 4Å: Chain C: K.30 Chain f: G.3139 No protein-ligand interaction detected (PLIP) MG.265: 4 residues within 4Å: Chain C: K.368, F.369, G.370 Chain f: A.3090 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:K.368, H2O.6, H2O.44, H2O.57, H2O.109 MG.266: 3 residues within 4Å: Chain W: F.44 Chain f: A.1568, U.1569 No protein-ligand interaction detected (PLIP) MG.267: 2 residues within 4Å: Chain f: G.1552, G.1553 No protein-ligand interaction detected (PLIP) MG.268: 2 residues within 4Å: Chain P: P.158 Chain f: A.2734 No protein-ligand interaction detected (PLIP) MG.269: 2 residues within 4Å: Chain f: G.1905, C.2336 No protein-ligand interaction detected (PLIP) MG.270: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.271: 3 residues within 4Å: Chain f: G.2396, G.2397, G.2398 No protein-ligand interaction detected (PLIP) MG.272: 2 residues within 4Å: Chain f: G.2396, C.2987 No protein-ligand interaction detected (PLIP) MG.273: 2 residues within 4Å: Chain f: C.659, G.2379 No protein-ligand interaction detected (PLIP) MG.274: 1 residues within 4Å: Chain f: C.1181 No protein-ligand interaction detected (PLIP) MG.275: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.276: 3 residues within 4Å: Chain Z: R.21 Chain f: C.652, U.952 No protein-ligand interaction detected (PLIP) MG.277: 2 residues within 4Å: Chain f: G.2881, C.2952 No protein-ligand interaction detected (PLIP) MG.278: 4 residues within 4Å: Chain f: G.1869, C.1872, A.1873, C.1875 No protein-ligand interaction detected (PLIP) MG.279: 1 residues within 4Å: Chain N: K.96 No protein-ligand interaction detected (PLIP) MG.280: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.281: 2 residues within 4Å: Chain N: R.79 Chain f: U.3013 No protein-ligand interaction detected (PLIP) MG.282: 2 residues within 4Å: Chain f: A.2915, U.2917 No protein-ligand interaction detected (PLIP) MG.283: 2 residues within 4Å: Chain f: G.1428, A.1429 No protein-ligand interaction detected (PLIP) MG.284: 3 residues within 4Å: Chain f: G.2619, C.2620, U.2621 No protein-ligand interaction detected (PLIP) MG.285: 3 residues within 4Å: Chain f: C.2620, C.2626, G.2628 No protein-ligand interaction detected (PLIP) MG.286: 4 residues within 4Å: Chain f: U.929, A.931, U.932, A.2142 No protein-ligand interaction detected (PLIP) MG.287: 2 residues within 4Å: Chain f: A.2171, C.2172 No protein-ligand interaction detected (PLIP) MG.288: 2 residues within 4Å: Chain f: C.2768, C.2769 No protein-ligand interaction detected (PLIP) MG.289: 1 residues within 4Å: Chain f: A.2766 No protein-ligand interaction detected (PLIP) MG.290: 1 residues within 4Å: Chain f: U.2770 No protein-ligand interaction detected (PLIP) MG.291: 2 residues within 4Å: Chain B: E.69 Chain f: G.939 No protein-ligand interaction detected (PLIP) MG.292: 2 residues within 4Å: Chain f: G.1454, G.1455 No protein-ligand interaction detected (PLIP) MG.293: 1 residues within 4Å: Chain f: U.2350 No protein-ligand interaction detected (PLIP) MG.294: 4 residues within 4Å: Chain f: A.2738, U.2739, U.2756, G.2757 No protein-ligand interaction detected (PLIP) MG.295: 2 residues within 4Å: Chain f: G.1428, A.1429 No protein-ligand interaction detected (PLIP) MG.296: 2 residues within 4Å: Chain f: C.1538, G.1539 No protein-ligand interaction detected (PLIP) MG.297: 2 residues within 4Å: Chain f: C.1543, C.1589 No protein-ligand interaction detected (PLIP) MG.298: 4 residues within 4Å: Chain f: G.2662, G.2710, G.2758, C.2759 No protein-ligand interaction detected (PLIP) MG.299: 6 residues within 4Å: Chain Z: I.22 Chain f: U.654, G.655, A.962, G.963, A.1154 No protein-ligand interaction detected (PLIP) MG.300: 1 residues within 4Å: Chain f: G.1322 No protein-ligand interaction detected (PLIP) MG.301: 3 residues within 4Å: Chain f: G.1461, C.1462, A.1463 No protein-ligand interaction detected (PLIP) MG.302: 2 residues within 4Å: Chain f: G.2138, A.2327 No protein-ligand interaction detected (PLIP) MG.303: 3 residues within 4Å: Chain f: G.1498, C.1844, A.1845 No protein-ligand interaction detected (PLIP) MG.304: 2 residues within 4Å: Chain f: C.2369, A.2370 No protein-ligand interaction detected (PLIP) MG.305: 1 residues within 4Å: Chain f: C.2325 No protein-ligand interaction detected (PLIP) MG.306: 2 residues within 4Å: Chain f: U.2131, C.2132 No protein-ligand interaction detected (PLIP) MG.307: 2 residues within 4Å: Chain f: A.2320, U.2321 No protein-ligand interaction detected (PLIP) MG.308: 2 residues within 4Å: Chain f: G.2388, A.2389 No protein-ligand interaction detected (PLIP) MG.309: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.310: 3 residues within 4Å: Chain f: C.967, A.2632, A.2803 No protein-ligand interaction detected (PLIP) MG.311: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.312: 1 residues within 4Å: Chain f: G.1869 No protein-ligand interaction detected (PLIP) MG.313: 1 residues within 4Å: Chain f: G.3083 No protein-ligand interaction detected (PLIP) MG.314: 3 residues within 4Å: Chain f: A.1546, G.1547, G.1591 No protein-ligand interaction detected (PLIP) MG.315: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.316: 3 residues within 4Å: Chain f: A.2701, G.2702, G.2703 No protein-ligand interaction detected (PLIP) MG.317: 2 residues within 4Å: Chain f: G.2827, U.2864 No protein-ligand interaction detected (PLIP) MG.318: 2 residues within 4Å: Chain f: G.1813, G.1814 No protein-ligand interaction detected (PLIP) MG.319: 1 residues within 4Å: Chain O: R.65 No protein-ligand interaction detected (PLIP) MG.320: 2 residues within 4Å: Chain f: U.1751, G.1752 No protein-ligand interaction detected (PLIP) MG.321: 5 residues within 4Å: Chain f: C.1714, C.1715, A.1738, G.1739, G.1740 No protein-ligand interaction detected (PLIP) MG.322: 1 residues within 4Å: Chain f: U.1843 No protein-ligand interaction detected (PLIP) MG.323: 2 residues within 4Å: Chain f: G.1549, U.1550 No protein-ligand interaction detected (PLIP) MG.324: 1 residues within 4Å: Chain f: G.271 No protein-ligand interaction detected (PLIP) MG.325: 1 residues within 4Å: Chain f: G.3299 No protein-ligand interaction detected (PLIP) MG.326: 2 residues within 4Å: Chain f: G.917, G.919 No protein-ligand interaction detected (PLIP) MG.327: 2 residues within 4Å: Chain f: C.891, A.1463 No protein-ligand interaction detected (PLIP) MG.328: 2 residues within 4Å: Chain f: A.1493, C.1872 No protein-ligand interaction detected (PLIP) MG.329: 1 residues within 4Å: Chain f: C.1789 No protein-ligand interaction detected (PLIP) MG.330: 3 residues within 4Å: Chain f: A.2216, A.2217, A.2218 No protein-ligand interaction detected (PLIP) MG.331: 5 residues within 4Å: Chain C: K.175 Chain f: U.3295, G.3296, G.3370, C.3371 No protein-ligand interaction detected (PLIP) MG.332: 2 residues within 4Å: Chain f: A.712, G.713 No protein-ligand interaction detected (PLIP) MG.333: 2 residues within 4Å: Chain f: G.1004, G.1005 No protein-ligand interaction detected (PLIP) MG.334: 2 residues within 4Å: Chain f: G.1006, U.1007 No protein-ligand interaction detected (PLIP) MG.335: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.336: 3 residues within 4Å: Chain f: U.1192, G.1193, A.1330 No protein-ligand interaction detected (PLIP) MG.337: 2 residues within 4Å: Chain f: C.1390, G.1391 No protein-ligand interaction detected (PLIP) MG.338: 1 residues within 4Å: Chain f: G.1433 No protein-ligand interaction detected (PLIP) MG.339: 4 residues within 4Å: Chain f: U.1468, C.1883, G.1884, A.1885 No protein-ligand interaction detected (PLIP) MG.340: 3 residues within 4Å: Chain f: A.1564, C.1565, A.1566 No protein-ligand interaction detected (PLIP) MG.341: 2 residues within 4Å: Chain f: C.2524, G.2525 No protein-ligand interaction detected (PLIP) MG.342: 3 residues within 4Å: Chain f: G.1657, A.1658, G.1659 No protein-ligand interaction detected (PLIP) MG.343: 3 residues within 4Å: Chain d: K.44, D.59 Chain f: G.1732 No protein-ligand interaction detected (PLIP) MG.344: 2 residues within 4Å: Chain f: G.1669, G.1670 No protein-ligand interaction detected (PLIP) MG.345: 3 residues within 4Å: Chain f: U.2322, A.2323, A.2324 No protein-ligand interaction detected (PLIP) MG.346: 1 residues within 4Å: Chain f: A.2302 No protein-ligand interaction detected (PLIP) MG.347: 3 residues within 4Å: Chain f: G.2190, A.2191, U.2321 No protein-ligand interaction detected (PLIP) MG.348: 1 residues within 4Å: Chain f: A.2402 No protein-ligand interaction detected (PLIP) MG.349: 1 residues within 4Å: Ligands: K.40 No protein-ligand interaction detected (PLIP) MG.350: 5 residues within 4Å: Chain I: R.116 Chain f: U.2621, G.2622, G.2623, G.2624 No protein-ligand interaction detected (PLIP) MG.351: 1 residues within 4Å: Chain f: A.2632 No protein-ligand interaction detected (PLIP) MG.352: 3 residues within 4Å: Chain f: A.2644, U.2645, C.2730 No protein-ligand interaction detected (PLIP) MG.353: 2 residues within 4Å: Chain f: A.2738, G.2758 No protein-ligand interaction detected (PLIP) MG.354: 2 residues within 4Å: Chain f: A.2855, G.2857 No protein-ligand interaction detected (PLIP) MG.355: 1 residues within 4Å: Chain f: A.2891 No protein-ligand interaction detected (PLIP) MG.356: 3 residues within 4Å: Chain f: C.2903, A.2904, A.2906 No protein-ligand interaction detected (PLIP) MG.357: 1 residues within 4Å: Chain f: G.2956 No protein-ligand interaction detected (PLIP) MG.358: 2 residues within 4Å: Chain f: C.3028, G.3029 No protein-ligand interaction detected (PLIP) MG.359: 2 residues within 4Å: Chain f: U.3114, G.3115 No protein-ligand interaction detected (PLIP) MG.360: 3 residues within 4Å: Chain f: U.1409, U.1410 Chain h: G.14 No protein-ligand interaction detected (PLIP) MG.361: 2 residues within 4Å: Chain f: G.338, A.339 No protein-ligand interaction detected (PLIP) MG.362: 4 residues within 4Å: Chain f: G.520, G.521, G.555, C.556 No protein-ligand interaction detected (PLIP) MG.363: 2 residues within 4Å: Chain F: R.90 Chain g: A.83 No protein-ligand interaction detected (PLIP) MG.364: 1 residues within 4Å: Chain g: U.4 No protein-ligand interaction detected (PLIP) MG.365: 3 residues within 4Å: Chain g: A.32, G.41, A.42 No protein-ligand interaction detected (PLIP) MG.366: 2 residues within 4Å: Chain g: G.64, G.65 No protein-ligand interaction detected (PLIP) MG.367: 3 residues within 4Å: Chain g: U.21, U.53, A.55 No protein-ligand interaction detected (PLIP) MG.371: 1 residues within 4Å: Chain h: U.150 No protein-ligand interaction detected (PLIP) MG.372: 3 residues within 4Å: Chain f: C.1431 Chain h: A.24, U.25 No protein-ligand interaction detected (PLIP) MG.373: 2 residues within 4Å: Chain h: A.114, U.118 No protein-ligand interaction detected (PLIP) MG.374: 3 residues within 4Å: Chain h: U.60, G.61, C.67 No protein-ligand interaction detected (PLIP) MG.375: 2 residues within 4Å: Chain h: A.110, C.111 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.17: 7 residues within 4Å: Chain 8: C.19, R.21, C.22, C.34, A.36, C.37, Y.39 4 PLIP interactions: 4 interactions with chain 8 Metal complexes: 8:C.19, 8:C.22, 8:C.34, 8:C.37 ZN.18: 6 residues within 4Å: Chain b: C.96, K.98, C.99, C.110, K.112, C.115 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:C.96, b:C.99, b:C.110, b:C.115 ZN.20: 6 residues within 4Å: Chain c: C.12, S.14, C.17, T.21, C.74, C.77 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:C.12, c:C.17, c:C.74, c:C.77 ZN.21: 6 residues within 4Å: Chain d: C.39, F.41, C.42, C.57, D.59, C.60 4 PLIP interactions: 4 interactions with chain d Metal complexes: d:C.39, d:C.42, d:C.57, d:C.60

3 x SPM: SPERMINE(Non-covalent)(Non-functional Binders)

SPM.101: 11 residues within 4Å: Chain 0: H.10, N.11, Y.14 Chain f: G.1150, G.1151, C.1152, G.1153, A.1154, U.1155, A.1170, A.1378 2 PLIP interactions: 2 interactions with chain 0 Water bridges: 0:H.10, 0:H.10 SPM.102: 12 residues within 4Å: Ligands: MG.132 Chain c: R.45 Chain f: A.43, U.44, A.46, A.47, C.88, G.89, U.276, U.277, G.279, G.280 No protein-ligand interaction detected (PLIP) SPM.104: 12 residues within 4Å: Chain f: G.911, G.912, A.1501, A.1502, A.1540, U.1541, C.1542, G.1591, A.1592, A.1593 Chain h: G.116, U.117 No protein-ligand interaction detected (PLIP)

1 x SPD: SPERMIDINE(Non-covalent)

SPD.103: 12 residues within 4Å: Chain Z: M.38, H.39 Chain f: A.37, A.38, G.39, C.40, G.90, C.91, G.92, U.2767, C.2768, A.2805 1 PLIP interactions: 1 interactions with chain Z Water bridges: Z:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cottilli, P. et al., Cryo-EM structure and rRNA modification sites of a plant ribosome. Plant Commun. (2022)

Release Date

2022-07-13

Peptides

60S ribosomal protein L8: A
Ribos_L4_asso_C domain-containing protein: B
Ribosomal protein L3: C
Ribosomal_L18_c domain-containing protein: D
Ribosomal_L6e_N domain-containing protein: E
Thaliana 60S ribosomal protein L7: F
Ribosomal_L7Ae domain-containing protein: G
60S ribosomal protein uL6: H
60S ribosomal protein L10: I
60S ribosomal protein uL5: J
60S ribosomal protein L13: K
Ribosomal_L14e domain-containing protein: L
Ribosomal protein L15: M
60S ribosomal protein uL13: N
50S ribosomal protein L22, chloroplastic: O
Ribosomal_L18e/L15P domain-containing protein: P
Ribosomal protein L19: Q
60S ribosomal protein L18a: R
60S ribosomal protein eL21: S
60S ribosomal protein eL22: T
60S ribosomal protein uL14: U
TRASH domain-containing protein: V
Ribosomal_L23eN domain-containing protein: W
KOW domain-containing protein: X
60S ribosomal protein L27: Y
Putative 60S ribosomal protein L27a-3-like: Z
60S ribosomal protein L29: 0
Ribosomal_L7Ae domain-containing protein: 1
60S ribosomal protein eL31: 2
60S ribosomal protein eL32: 3
60S ribosomal protein eL33: 4
60S ribosomal protein eL34: 5
Similar to 60S ribosomal protein L35: 6
60S ribosomal protein L36: 7
Ribosomal protein L37: 8
60S ribosomal protein L38: 9
60S ribosomal protein eL39: a
Ubiquitin-like domain-containing protein: b
60S ribosomal protein eL42: c
60S ribosomal protein eL43: d
Ribosomal_L28e domain-containing protein: e

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

C
E

D
G

E
H

F
I

G
J

H
K

I
L

J
M

K
N

L
O

M
P

N
Q

O
R

P
S

Q
T

R
U

S
V

T
W

U
X

V
Y

W
Z

X
a

Y
b

Z
c

0
d

1
e

2
f

3
g

4
h

5
i

6
j

7
k

8
l

9
m

a
n

b
o

c
p

d
q

e
r

60S ribosomal protein L8

Ribos_L4_asso_C domain-containing protein

Ribosomal protein L3

Ribosomal_L18_c domain-containing protein

Ribosomal_L6e_N domain-containing protein

Thaliana 60S ribosomal protein L7

Ribosomal_L7Ae domain-containing protein

60S ribosomal protein uL6

60S ribosomal protein L10

60S ribosomal protein uL5

60S ribosomal protein L13

Ribosomal_L14e domain-containing protein

Ribosomal protein L15

60S ribosomal protein uL13

50S ribosomal protein L22, chloroplastic

Ribosomal_L18e/L15P domain-containing protein

Ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein eL21

60S ribosomal protein eL22

60S ribosomal protein uL14

TRASH domain-containing protein

Ribosomal_L23eN domain-containing protein

KOW domain-containing protein

60S ribosomal protein L27

Putative 60S ribosomal protein L27a-3-like

60S ribosomal protein L29

Ribosomal_L7Ae domain-containing protein

60S ribosomal protein eL31

60S ribosomal protein eL32

60S ribosomal protein eL33

60S ribosomal protein eL34

Similar to 60S ribosomal protein L35

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein eL39

Ubiquitin-like domain-containing protein

60S ribosomal protein eL42

60S ribosomal protein eL43

Ribosomal_L28e domain-containing protein

Related Entries With Identical Sequence