SMTL ID : 8azw.1

Cryo-EM structure of the plant 60S subunit

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
60 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
94 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
4 x ZN: ZINC ION(Non-covalent)
1 x SPD: SPERMIDINE(Non-covalent)
2 x SPM: SPERMINE(Non-functional Binders)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Smirnova, J. et al., Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants (2023)
Release Date
2023-06-07
Peptides
eL13 (60S ribosomal protein L13): B
eL14 (60S ribosomal protein L14): C
eL15 (60S ribosomal protein L15): D
eL18 (60S ribosomal protein L18): E
eL19 (60S ribosomal protein L19): F
eL20 (60S ribosomal protein L18a): G
eL21 (60S ribosomal protein L21): H
eL22 (60S ribosomal protein L22): I
eL24 (60S ribosomal protein L24): J
eL27 (60S ribosomal protein L27): K
eL28 (60S ribosomal protein L28): L
eL29 (60S ribosomal protein L29): M
eL30 (60S ribosomal protein L30): N
eL31 (60S ribosomal protein L31): O
eL32 (60S ribosomal protein L32): P
eL33 (60S ribosomal protein L35a): Q
eL34 (60S ribosomal protein L34): R
eL36 (60S ribosomal protein L36): S
eL37 (60S ribosomal protein L37): T
eL38 (60S ribosomal protein L38): U
eL39 (60S ribosomal protein L39): V
eL40 (60S ribosomal protein L40): W
eL41 (60S ribosomal protein L41): X
eL42 (60S ribosomal protein L42): Y
eL43 (60S ribosomal protein L37a): Z
eL6 (60S ribosomal protein L6): 0
eL8 (60S ribosomal protein L7a): 1
uL13 (60S ribosomal protein L13a): 2
uL14 (60S ribosomal protein L23): 3
uL15 (60S ribosomal protein L27a): 4
uL16 (60S ribosomal protein L10): 5
uL18 (60S ribosomal protein L5): 6
uL22 (60S ribosomal protein L17): 7
uL23 (60S ribosomal protein L23a): 8
uL24 (60S ribosomal protein L26): 9
uL29 (60S ribosomal protein L35): a
uL2 (60S ribosomal protein L8): b
uL30 (60S ribosomal protein L7): c
uL3 (60S ribosomal protein L3): d
uL4 (60S ribosomal protein L4): e
uL5 (60S ribosomal protein L11): f
uL6 (60S ribosomal protein L9): g
nascent chain: h
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
D
C
E
D
F
E
G
F
H
G
I
H
J
I
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
p
Y
Z
Z
a
0
b
1
c
2
d
3
e
4
f
5
g
6
h
7
j
8
k
9
m
a
n
b
o
c
q
d
r
e
s
f
t
g
u
h
l

eL13 (60S ribosomal protein L13)

eL14 (60S ribosomal protein L14)

eL15 (60S ribosomal protein L15)

eL18 (60S ribosomal protein L18)

eL19 (60S ribosomal protein L19)

eL20 (60S ribosomal protein L18a)

eL21 (60S ribosomal protein L21)

eL22 (60S ribosomal protein L22)

eL24 (60S ribosomal protein L24)

eL27 (60S ribosomal protein L27)

eL28 (60S ribosomal protein L28)

eL29 (60S ribosomal protein L29)

eL30 (60S ribosomal protein L30)

eL31 (60S ribosomal protein L31)

eL32 (60S ribosomal protein L32)

eL33 (60S ribosomal protein L35a)

eL34 (60S ribosomal protein L34)

eL36 (60S ribosomal protein L36)

eL37 (60S ribosomal protein L37)

eL38 (60S ribosomal protein L38)

eL39 (60S ribosomal protein L39)

eL40 (60S ribosomal protein L40)

eL41 (60S ribosomal protein L41)

eL42 (60S ribosomal protein L42)

eL43 (60S ribosomal protein L37a)

eL6 (60S ribosomal protein L6)

eL8 (60S ribosomal protein L7a)

uL13 (60S ribosomal protein L13a)

uL14 (60S ribosomal protein L23)

uL15 (60S ribosomal protein L27a)

uL16 (60S ribosomal protein L10)

uL18 (60S ribosomal protein L5)

uL22 (60S ribosomal protein L17)

uL23 (60S ribosomal protein L23a)

uL24 (60S ribosomal protein L26)

uL29 (60S ribosomal protein L35)

uL2 (60S ribosomal protein L8)

uL30 (60S ribosomal protein L7)

uL3 (60S ribosomal protein L3)

uL4 (60S ribosomal protein L4)

uL5 (60S ribosomal protein L11)

uL6 (60S ribosomal protein L9)

nascent chain

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