SMTL ID : 7qnx.1

The receptor binding domain of SARS-CoV-2 spike glycoprotein in complex with Beta-55 and EY6A Fabs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain E: F.12, G.13, N.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dejnirattisai, W. et al., SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses. Cell (2022)

Release Date

2022-01-19

Peptides

EY6A heavy chain: A
EY6A light chain: B
Beta-55 heavy chain: C
Beta-55 light chain: D
Surface glycoprotein: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

D
B

E
E

EY6A heavy chain

EY6A light chain

Beta-55 heavy chain

Beta-55 light chain

Surface glycoprotein

Related Entries With Identical Sequence