SMTL ID : 7qtx.1

Kaposi sarcoma associated herpes virus (KSHV) encoded apoptosis inhibitor, KsBcl-2 in complex with Puma BH3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-1-1-mer

Ligands

3 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: R.64, F.65, H.66 Ligand excluded by PLIP BR.2: 4 residues within 4Å: Chain A: E.109, P.110, H.111, L.112 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: K.143, A.144, T.147 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: S.54, L.55, A.58 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: M.59, V.63 Chain B: Q.3, W.4, E.7, I.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.3 EDO.6: 2 residues within 4Å: Chain B: R.25, R.26 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suraweera, C.D. et al., Structural Insight into KsBcl-2 Mediated Apoptosis Inhibition by Kaposi Sarcoma Associated Herpes Virus. Viruses (2022)

Release Date

2022-11-23

Peptides

Bcl-2: A
Bcl-2-binding component 3, isoforms 1/2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bcl-2

Bcl-2-binding component 3, isoforms 1/2

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