SMTL ID : 7qxy.1

X-ray structure of furin in complex with the dichlorophenylpyridine-based inhibitor 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.67, D.70, D.72, D.74, R.118 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.67, A:D.74, H2O.6, H2O.10, H2O.20 CA.2: 9 residues within 4Å: Chain A: D.8, D.55, V.98, A.99, N.101, V.103, C.104, G.105, V.106 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.3: 6 residues within 4Å: Chain A: D.151, G.187, D.194, C.196, D.199, E.224 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.194, A:E.224, H2O.7, H2O.11, H2O.15

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: T.202, S.204, T.207, S.209, M.427 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.207, A:T.207, A:S.209 NA.5: 3 residues within 4Å: Chain A: P.401, S.437, G.438 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.437 NA.6: 3 residues within 4Å: Chain A: D.157, G.158, W.424 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.157, A:D.157, A:G.158 NA.7: 2 residues within 4Å: Chain A: T.306, N.307 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.306

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: Y.206, K.342, Y.464 Ligand excluded by PLIP

1 x I1G: 3-[4-[5-[4-[[4-(acetamidomethyl)piperidin-1-ium-1-yl]methyl]-6-[3,5-bis(chloranyl)phenyl]pyridin-2-yl]oxypyrimidin-2-yl]piperazin-1-ium-1-yl]propanoate(Non-covalent)

I1G.9: 23 residues within 4Å: Chain A: L.45, D.47, D.84, R.86, H.87, M.119, L.120, V.124, T.125, D.126, E.129, L.133, A.145, S.146, W.147, G.148, P.149, D.157, G.158, P.159, A.160, W.184, Y.201 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.120, A:E.129, A:W.147, A:A.160, A:W.184, A:Y.201 Hydrogen bonds: A:Y.201 Water bridges: A:D.47, A:R.86, A:R.86, A:H.87, A:D.126, A:D.126, A:W.147 Salt bridges: A:E.129, A:D.157 Halogen bonds: A:L.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dahms, S.O. et al., Dichlorophenylpyridine-Based Molecules Inhibit Furin through an Induced-Fit Mechanism. Acs Chem.Biol. (2022)

Release Date

2022-04-20

Peptides

Furin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Furin

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