SMTL ID : 7qyr.1 (1 other biounit)

Crystal structure of RimK from Pseudomonas aeruginosa PAO1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: V.139, K.141, Q.177, E.178, Y.179, I.180, D.187, F.210, R.211, S.212, N.213, L.250, M.259 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.141, A:E.178, A:I.180, A:R.203, A:S.212, A:S.212, A:N.213 ADP.2: 13 residues within 4Å: Chain B: V.139, K.141, Q.177, E.178, Y.179, I.180, D.187, R.203, F.210, R.211, S.212, L.250, M.259 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.141, B:E.178, B:I.180, B:R.203, B:S.212, B:S.212, B:S.212 ADP.3: 13 residues within 4Å: Chain C: V.139, K.141, Q.177, E.178, Y.179, I.180, D.187, R.203, F.210, R.211, S.212, L.250, M.259 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.141, C:E.178, C:I.180, C:D.187, C:R.203, C:S.212 ADP.4: 8 residues within 4Å: Chain D: V.139, K.141, Q.177, E.178, Y.179, I.180, D.187, M.259 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.141, D:E.178, D:I.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, C.M.A. et al., Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK. Proteins (2023)

Release Date

2022-10-05

Peptides

Probable alpha-L-glutamate ligase: ABCD
poly-glutamate: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
F

E
K

F
M

G
N

H
P

Probable alpha-L-glutamate ligase

poly-glutamate

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