SMTL ID : 7qyr.2 (1 other biounit)

Crystal structure of RimK from Pseudomonas aeruginosa PAO1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: V.139, K.141, Q.177, E.178, Y.179, I.180, D.187, F.210, R.211, L.250, M.259 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.141, A:E.178, A:I.180, A:D.187, A:R.211 ADP.2: 11 residues within 4Å: Chain B: V.139, K.141, Q.177, E.178, Y.179, I.180, R.203, F.210, S.212, L.250, M.259 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.141, B:Q.177, B:I.180, B:R.203, B:S.212, B:S.212 ADP.3: 13 residues within 4Å: Chain C: V.139, K.141, Q.177, E.178, Y.179, I.180, G.185, D.187, R.203, F.210, S.212, L.250, M.259 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.141, C:E.178, C:I.180, C:D.187, C:S.212 ADP.4: 11 residues within 4Å: Chain D: V.139, K.141, Q.177, E.178, Y.179, I.180, G.185, A.186, D.187, L.250, M.259 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.141, D:E.178, D:I.180, D:A.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, C.M.A. et al., Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK. Proteins (2023)

Release Date

2022-10-05

Peptides

Probable alpha-L-glutamate ligase: ABCD
poly-glutamate: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
G

D
H

E
L

F
O

G
Q

H
T

Probable alpha-L-glutamate ligase

poly-glutamate

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