SMTL ID : 7qys.2 (3 other biounits)

Crystal structure of RimK from Pseudomonas syringae DC3000

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: V.139, K.141, G.148, V.151, Q.177, E.178, Y.179, I.180, D.187, F.210, S.212, N.213, L.250, M.259, E.260 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.141, A:G.148, A:E.178, A:I.180, A:S.212, A:N.213 Salt bridges: A:K.141 ADP.2: 11 residues within 4Å: Chain C: V.139, G.148, V.151, Q.177, E.178, Y.179, I.180, D.187, F.210, L.250, M.259 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.178, C:I.180 ADP.3: 12 residues within 4Å: Chain D: V.139, K.141, G.148, V.151, Q.177, E.178, Y.179, I.180, F.210, L.250, M.259, E.260 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.141, D:Q.177, D:I.180 Salt bridges: D:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, C.M.A. et al., Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK. Proteins (2023)

Release Date

2022-10-05

Peptides

Probable alpha-L-glutamate ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Probable alpha-L-glutamate ligase

Related Entries With Identical Sequence