SMTL ID : 7qys.3 (3 other biounits)

Crystal structure of RimK from Pseudomonas syringae DC3000

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain B: V.139, G.148, I.149, V.151, Q.177, E.178, Y.179, I.180, D.187, F.210, L.250, M.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.149, B:E.178, B:I.180 ADP.2: 11 residues within 4Å: Chain C: V.139, G.148, V.151, E.178, Y.179, I.180, D.187, F.210, L.250, M.259, E.260 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.148, C:E.178, C:I.180, C:E.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, C.M.A. et al., Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK. Proteins (2023)

Release Date

2022-10-05

Peptides

Probable alpha-L-glutamate ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

Probable alpha-L-glutamate ligase

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