SMTL ID : 7r2l.1

Human Cyclophilin D in complex with N-(4-aminophenyl)-7-methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x UX5: N-(4-aminophenyl)-7-methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide(Non-covalent)

UX5.1: 15 residues within 4Å: Chain A: H.54, R.55, Q.63, G.72, T.73, R.82, A.101, N.102, A.103, T.107, N.108, G.109, S.110, Q.111, S.149 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.55, A:A.103, A:Q.111 Hydrogen bonds: A:R.55, A:Q.63, A:G.72, A:T.107, A:G.109, A:S.110 Water bridges: A:R.55, A:Q.111 pi-Cation interactions: A:R.55

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 9 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, A.101, N.102, F.113, L.122, H.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.55 Water bridges: A:R.55 pi-Cation interactions: A:F.113

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: V.93, G.94, P.95, G.96, V.97, H.131 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, D.O. et al., Human Cyclophilin D in complex with N-(4-aminophenyl)-7-methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide. To Be Published

Release Date

2023-02-15

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

Related Entries With Identical Sequence